Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling From Formalin-Fixed Paraffin-Embedded Genome Sequence Data

by Dollina D. Dodani, Matthew H. Nguyen, Ryan D. Morin, Ryan D. Morin, Marco A. Marra, Marco A. Marra, Richard D. Corbett
Published 2022-04-01

JAGuaR: junction alignments to genome for RNA-seq reads.

by Yaron S Butterfield, Maayan Kreitzman, Nina Thiessen, Richard D Corbett, Yisu Li, Johnson Pang, Yussanne P Ma, Steven J M Jones, İnanç Birol
Published 2014-01-01

TMBur: a distributable tumor mutation burden approach for whole genome sequencing

by Emma Titmuss, Richard D. Corbett, Scott Davidson, Sanna Abbasi, Laura M. Williamson, Erin D. Pleasance, Adam Shlien, Daniel J. Renouf, Steven J. M. Jones, Janessa Laskin, Marco A. Marra
Published 2022-09-01

A high-throughput pipeline for DNA/RNA/small RNA purification from tissue samples for sequencing

by Jing Xu, Pawan K Pandoh, Richard D Corbett, Duane Smailus, Reanne Bowlby, Denise Brooks, Helen McDonald, Simon Haile, Sundeep Chahal, Steve Bilobram, Karen L Mungall, Andrew J Mungall, Robin Coope, Richard A Moore, Yongjun Zhao, Steven JM Jones, Marco A Marra
Published 2023-08-01

Evaluation of protocols for rRNA depletion-based RNA sequencing of nanogram inputs of mammalian total RNA.

by Simon Haile, Richard D Corbett, Steve Bilobram, Karen Mungall, Bruno M Grande, Heather Kirk, Pawan Pandoh, Tina MacLeod, Helen McDonald, Miruna Bala, Robin J Coope, Richard A Moore, Andrew J Mungall, Yongjun Zhao, Ryan D Morin, Steven J Jones, Marco A Marra
Published 2019-01-01

Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing

by Simon Haile, Richard D. Corbett, Tina MacLeod, Steve Bilobram, Duane Smailus, Philip Tsao, Heather Kirk, Helen McDonald, Pawan Pandoh, Miruna Bala, Martin Hirst, Diane Miller, Richard A. Moore, Andrew J. Mungall, Jacquie Schein, Robin J. Coope, Yussanne Ma, Yongjun Zhao, Rob A. Holt, Steven J. Jones, Marco A. Marra
Published 2017-07-01

A high-throughput protocol for isolating cell-free circulating tumor DNA from peripheral blood

by Pawan K Pandoh, Richard D Corbett, Helen McDonald, Miguel Alcaide, Heather Kirk, Eva Trinh, Simon Haile, Tina MacLeod, Duane Smailus, Steve Bilobram, Andrew J Mungall, Yussanne Ma, Richard A Moore, Robin Coope, Yongjun Zhao, Steven JM Jones, Robert A Holt, Aly Karsan, Ryan D Morin, Marco A Marra
Published 2019-02-01

Automated high throughput nucleic acid purification from formalin-fixed paraffin-embedded tissue samples for next generation sequence analysis.

by Simon Haile, Pawan Pandoh, Helen McDonald, Richard D Corbett, Philip Tsao, Heather Kirk, Tina MacLeod, Martin Jones, Steve Bilobram, Denise Brooks, Duane Smailus, Christian Steidl, David W Scott, Miruna Bala, Martin Hirst, Diane Miller, Richard A Moore, Andrew J Mungall, Robin J Coope, Yussanne Ma, Yongjun Zhao, Rob A Holt, Steven J Jones, Marco A Marra
Published 2017-01-01

Multi-Omic Analysis of CIC’s Functional Networks Reveals Novel Interaction Partners and a Potential Role in Mitotic Fidelity

by Yuka Takemon, Véronique G. LeBlanc, Jungeun Song, Susanna Y. Chan, Stephen Dongsoo Lee, Diane L. Trinh, Shiekh Tanveer Ahmad, William R. Brothers, Richard D. Corbett, Alessia Gagliardi, Annie Moradian, J. Gregory Cairncross, Stephen Yip, Samuel A. J. R. Aparicio, Jennifer A. Chan, Christopher S. Hughes, Gregg B. Morin, Sharon M. Gorski, Suganthi Chittaranjan, Marco A. Marra
Published 2023-05-01

A Distributed Whole Genome Sequencing Benchmark Study

by Richard D. Corbett, Robert Eveleigh, Joe Whitney, Namrata Barai, Mathieu Bourgey, Eric Chuah, Joanne Johnson, Richard A. Moore, Neda Moradin, Karen L. Mungall, Sergio Pereira, Miriam S. Reuter, Bhooma Thiruvahindrapuram, Richard F. Wintle, Jiannis Ragoussis, Lisa J. Strug, Jo-Anne Herbrick, Naveed Aziz, Steven J. M. Jones, Mark Lathrop, Stephen W. Scherer, Alfredo Staffa, Andrew J. Mungall
Published 2020-12-01

A Scalable Strand-Specific Protocol Enabling Full-Length Total RNA Sequencing From Single Cells

by Simon Haile, Richard D. Corbett, Veronique G. LeBlanc, Lisa Wei, Stephen Pleasance, Steve Bilobram, Ka Ming Nip, Kirstin Brown, Eva Trinh, Jillian Smith, Diane L. Trinh, Miruna Bala, Eric Chuah, Robin J. N. Coope, Richard A. Moore, Andrew J. Mungall, Karen L. Mungall, Yongjun Zhao, Martin Hirst, Samuel Aparicio, Inanc Birol, Inanc Birol, Steven J. M. Jones, Steven J. M. Jones, Marco A. Marra, Marco A. Marra
Published 2021-06-01