Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea

by Cindy J. Castelle, Raphaël Méheust, Raphaël Méheust, Raphaël Méheust, Alexander L. Jaffe, Kiley Seitz, Xianzhe Gong, Xianzhe Gong, Brett J. Baker, Jillian F. Banfield, Jillian F. Banfield, Jillian F. Banfield
Published 2021-06-01

The distinction of CPR bacteria from other bacteria based on protein family content

by Raphaël Méheust, David Burstein, Cindy J. Castelle, Jillian F. Banfield
Published 2019-09-01

Candidate Phyla Radiation Roizmanbacteria From Hot Springs Have Novel and Unexpectedly Abundant CRISPR-Cas Systems

by Lin-Xing Chen, Basem Al-Shayeb, Raphaël Méheust, Raphaël Méheust, Wen-Jun Li, Jennifer A. Doudna, Jennifer A. Doudna, Jillian F. Banfield, Jillian F. Banfield
Published 2019-05-01

Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups

by Raphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield
Published 2022-07-01

Post-translational flavinylation is associated with diverse extracytosolic redox functionalities throughout bacterial life

by Raphaël Méheust, Shuo Huang, Rafael Rivera-Lugo, Jillian F Banfield, Samuel H Light
Published 2021-05-01

Formation of chimeric genes with essential functions at the origin of eukaryotes

by Raphaël Méheust, Debashish Bhattacharya, Jananan S. Pathmanathan, James O. McInerney, Philippe Lopez, Eric Bapteste
Published 2018-03-01

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts.

by Etienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François-Joseph Lapointe
Published 2016-01-01

Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution

by Raphaël Méheust, Andrew K. Watson, François-Joseph Lapointe, R. Thane Papke, Philippe Lopez, Eric Bapteste
Published 2018-06-01

Bacterial Secondary Metabolite Biosynthetic Potential in Soil Varies with Phylum, Depth, and Vegetation Type

by Allison M. Sharrar, Alexander Crits-Christoph, Raphaël Méheust, Spencer Diamond, Evan P. Starr, Jillian F. Banfield
Published 2020-06-01

Global genomic analysis of microbial biotransformation of arsenic highlights the importance of arsenic methylation in environmental and human microbiomes

by Ray Keren, Raphaël Méheust, Joanne M. Santini, Alex Thomas, Jacob West-Roberts, Jillian F. Banfield, Lisa Alvarez-Cohen
Published 2022-01-01

Structure of the bacterial ribosome at 2 Å resolution

by Zoe L Watson, Fred R Ward, Raphaël Méheust, Omer Ad, Alanna Schepartz, Jillian F Banfield, Jamie HD Cate
Published 2020-09-01

Distinct Energy-Coupling Factor Transporter Subunits Enable Flavin Acquisition and Extracytosolic Trafficking for Extracellular Electron Transfer in Listeria monocytogenes

by Rafael Rivera-Lugo, Shuo Huang, Frank Lee, Raphaël Méheust, Anthony T. Iavarone, Ashley M. Sidebottom, Eric Oldfield, Daniel A. Portnoy, Samuel H. Light
Published 2023-02-01

Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome

by Richard G Dorrell, Gillian Gile, Giselle McCallum, Raphaël Méheust, Eric P Bapteste, Christen M Klinger, Loraine Brillet-Guéguen, Katalina D Freeman, Daniel J Richter, Chris Bowler
Published 2017-05-01

A refined picture of the native amine dehydrogenase family revealed by extensive biodiversity screening

by Eddy Elisée, Laurine Ducrot, Raphaël Méheust, Karine Bastard, Aurélie Fossey-Jouenne, Gideon Grogan, Eric Pelletier, Jean-Louis Petit, Mark Stam, Véronique de Berardinis, Anne Zaparucha, David Vallenet, Carine Vergne-Vaxelaire
Published 2024-06-01

Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale

by Paula B. Matheus Carnevali, Adi Lavy, Alex D. Thomas, Alexander Crits-Christoph, Spencer Diamond, Raphaël Méheust, Matthew R. Olm, Allison Sharrar, Shufei Lei, Wenming Dong, Nicola Falco, Nicholas Bouskill, Michelle E. Newcomer, Peter Nico, Haruko Wainwright, Dipankar Dwivedi, Kenneth H. Williams, Susan Hubbard, Jillian F. Banfield
Published 2021-05-01

A global ocean atlas of eukaryotic genes

by Quentin Carradec, Eric Pelletier, Corinne Da Silva, Adriana Alberti, Yoann Seeleuthner, Romain Blanc-Mathieu, Gipsi Lima-Mendez, Fabio Rocha, Leila Tirichine, Karine Labadie, Amos Kirilovsky, Alexis Bertrand, Stefan Engelen, Mohammed-Amin Madoui, Raphaël Méheust, Julie Poulain, Sarah Romac, Daniel J. Richter, Genki Yoshikawa, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Olivier Jaillon, Jean-Marc Aury, Eric Karsenti, Matthew B. Sullivan, Shinichi Sunagawa, Peer Bork, Fabrice Not, Pascal Hingamp, Jeroen Raes, Lionel Guidi, Hiroyuki Ogata, Colomban de Vargas, Daniele Iudicone, Chris Bowler, Patrick Wincker
Published 2018-01-01