Insights into the genome sequence of a free-living Kinetoplastid: <it>Bodo saltans </it>(Kinetoplastida: Euglenozoa)

by Berriman Matthew, Quail Michael A, Jackson Andrew P
Published 2008-12-01

The <it>Mycoplasma conjunctivae </it>genome sequencing, annotation and analysis

by Frey Joachim, Schmidheini Tobias, Wunderlin Christof, Wigger George, Calderon-Copete Sandra P, Quail Michael A, Falquet Laurent
Published 2009-06-01

Independent evolution of the core and accessory gene sets in the genus <it>Neisseria</it>: insights gained from the genome of <it>Neisseria lactamica </it>isolate 020-06

by White Brian, Cherevach Inna, Quail Michael A, Vernikos Georgios S, Bentley Stephen D, Bennett Julia S, Parkhill Julian, Maiden Martin CJ
Published 2010-11-01

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

by Quail Michael A, Smith Miriam, Coupland Paul, Otto Thomas D, Harris Simon R, Connor Thomas R, Bertoni Anna, Swerdlow Harold P, Gu Yong
Published 2012-07-01

Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes

by Oyola Samuel O, Otto Thomas D, Gu Yong, Maslen Gareth, Manske Magnus, Campino Susana, Turner Daniel J, MacInnis Bronwyn, Kwiatkowski Dominic P, Swerdlow Harold P, Quail Michael A
Published 2012-01-01

The genome sequence of the fish pathogen <it>Aliivibrio salmonicida </it>strain LFI1238 shows extensive evidence of gene decay

by Thurston Scott, Sanders Suzanne, Quail Michael A, Norbertczak Halina, Harris David, Churcher Carol, Bason Nathalie, Paulsen Steinar, Seeger Kathy, Holden Matthew TG, Lorentzen Marit, Hjerde Erik, Parkhill Julian, Willassen Nils, Thomson Nicholas R
Published 2008-12-01

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

by White Brian, Simmonds Mark, Walker Danielle, Norbertczak Halina, Quail Michael A, Bhutta Zulfiqar A, Hasan Rumina, Langridge Gemma C, Wain John, Thomson Nicholas R, Holt Kathryn E, Bason Nathalie, Mungall Karen, Dougan Gordon, Parkhill Julian
Published 2009-01-01

Comparative genomics of the emerging human pathogen <it>Photorhabdus asymbiotica </it>with the insect pathogen <it>Photorhabdus luminescens</it>

by Churcher Carol, Simmonds Mark, Smith Frances, Bason Nathalie, Mayho Matthew, Ormond Douglas, Clark Louise, Bignell Alexandra, Barron Andrew, Vlisidou Isabella, Sanchez-Contreras Maria, Corton Craig, Crossman Lisa, Waterfield Nicholas R, Wilkinson Paul, Harris David, Thompson Nicholas R, Quail Michael, Parkhill Julian, ffrench-Constant Richard H
Published 2009-07-01

Evidence for niche adaptation in the genome of the bovine pathogen <it>Streptococcus uberis</it>

by Kehoe Michael, Maskell Duncan, Field Terence R, Egan Sharon A, Barrell Bart G, Woodward John, Quail Michael A, Clark Louise, Barron Andy, Bignell Alexandra, Lennard Nicola, Leigh James A, Holden Matthew TG, Ward Philip N, Dowson Christopher G, Chanter Neil, Whatmore Adrian M, Bentley Stephen D, Parkhill Julian
Published 2009-01-01

Co-evolution of genomes and plasmids within <it>Chlamydia trachomatis </it>and the emergence in Sweden of a new variant strain

by Skilton Rachel J, Salim Omar, Quail Michael A, Lockey Sarah J, Lennard Nicola, Lambden Paul R, Cutcliffe Lesley T, Clark Louise, Bjartling Carina, Bignell Alexandra, Barron Andrew, Marsh Pete, Persson Kenneth, Harris Simon R, Seth-Smith Helena MB, Wang Yibing, Holland Martin J, Parkhill Julian, Thomson Nicholas R, Clarke Ian N
Published 2009-05-01

Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia.

by Hang, Vu Thi Ty, Holmes, Edward C., Veasna, Duong, Quy, Nguyen Thien, Hien, Tran Tinh, Quail, Michael, Churcher, Carol, Parkhill, Julian, Cardosa, Mary Jane, Farrar, Jeremy, Wills, Bridget, Lennon, Niall J., Birren, Bruce W., Buchy, Philippe, Henn, Matthew R., Simmons, Cameron P.
Published 2010

Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization.

by Ling , King Hwa, Rajandream, Marie Adèle, Rivailler, Pierre, Ivens, Alasdair C., Yap, Soon J., Madeira, Alda Maria Backx Noronha, Mungall, Karen L., Billington, Karen J., Yee, Wai Y., Bankier, Alan T., Carroll, Fionnadh, Durham, Alan Mitchell, Peters, Nick T., Loo, Shu S., Isa, M. N M, Novaes, Jeniffer, Quail, Michael A., Rosli, Rozita, Shamsudin, Mariana Nor, Sobreira, Tiago José Pascoal, Tivey, Adrian R., Wai, Siew F., White, Sarah E., Wu, Xikun, Kerhornou, Arnaud X., Blake, Damer P., Mohamed, Rahmah I., Shirley, Martin W., Gruber, Arthur, Berriman, Matthew, Tomley, Fiona M Fiona, Dear, Paul H., Wan, Kiew Lian
Published 2007

The genome sequence of the ringlet, Aphantopus hyperantus Linnaeus 1758

by Mead, Dan, Saccheri, Ilik, Yung, Carl, Lohse, Konrad, Lohse, Carla, Ashmole, Philip, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Quail, Michael, Dolucan, Jale, McCarthy, Shane, Howe, Kerstin, Wood, Jonathan, Torrance, James, Tracey, Alan, Whiteford, Sam, Challis, Richard, Durbin, Richard, Blaxter, Mark
Published 2021

The genome sequence of the European golden eagle, Aquila chrysaetos chrysaetos Linnaeus 1758.

by Mead, Dan, Ogden, Rob, Meredith, Anna, Peniche, Gabriela, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Holmes, Nadine, Wright, Victoria, Loose, Matt, Quail, Michael A, McCarthy, Shane A, Howe, Kerstin, Chow, William, Torrance, James, Collins, Joanna, Challis, Richard, Durbin, Richard, Blaxter, Mark
Published 2021

The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769.

by Howe, Kerstin, Dwinell, Melinda, Shimoyama, Mary, Corton, Craig, Betteridge, Emma, Dove, Alexander, Quail, Michael A, Smith, Michelle, Saba, Laura, Williams, Robert W, Chen, Hao, Kwitek, Anne E, McCarthy, Shane A, Uliano-Silva, Marcela, Chow, William, Tracey, Alan, Torrance, James, Sims, Ying, Challis, Richard, Threlfall, Jonathan, Blaxter, Mark
Published 2021

The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758.

by Carpenter, Angus I, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Quail, Michael A, McCarthy, Shane A, Uliano Da Silva, Marcela, Howe, Kerstin, Torrance, James, Wood, Jonathan, Pelan, Sarah, Sims, Ying, Tricomi, Francesca Floriana, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Blaxter, Mark
Published 2022

The mutational signature profile of known and suspected human carcinogens in mice.

by Riva, Laura, Pandiri, Arun R, Li, Yun Rose, Droop, Alastair, Hewinson, James, Quail, Michael A, Iyer, Vivek, Shepherd, Rebecca, Herbert, Ronald A, Campbell, Peter J, Sills, Robert C, Alexandrov, Ludmil B, Balmain, Allan, Adams, David J
Published 2020

Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data.

by Page, Andrew J, De Silva, Nishadi, Hunt, Martin, Quail, Michael A, Parkhill, Julian, Harris, Simon R, Otto, Thomas D, Keane, Jacqueline A
Published 2019

Complex landscapes of somatic rearrangement in human breast cancer genomes.

by Stephens, Philip J, McBride, David J, Lin, Meng-Lay, Varela, Ignacio, Pleasance, Erin D, Simpson, Jared T, Stebbings, Lucy A, Leroy, Catherine, Edkins, Sarah, Mudie, Laura J, Greenman, Chris D, Jia, Mingming, Latimer, Calli, Teague, Jon W, Lau, King Wai, Burton, John, Quail, Michael A, Swerdlow, Harold, Churcher, Carol, Natrajan, Rachael, Sieuwerts, Anieta M, Martens, John WM, Silver, Daniel P, Langerød, Anita, Russnes, Hege EG, Foekens, John A, Reis-Filho, Jorge S, van 't Veer, Laura, Richardson, Andrea L, Børresen-Dale, Anne-Lise, Campbell, Peter J, Futreal, P Andrew, Stratton, Michael R
Published 2009

Exploration of signals of positive selection derived from genotype-based human genome scans using re-sequencing data.

by Hu, Min, Ayub, Qasim, Guerra-Assunção, José Afonso, Long, Quan, Ning, Zemin, Huang, Ni, Romero, Irene Gallego, Mamanova, Lira, Akan, Pelin, Liu, Xin, Coffey, Alison J, Turner, Daniel J, Swerdlow, Harold, Burton, John, Quail, Michael A, Conrad, Donald F, Enright, Anton J, Tyler-Smith, Chris, Xue, Yali
Published 2018