Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models

by Lister Allyson L., Pocock Matthew, Wipat Anil
Published 2007-12-01

Annotation of SBML models through rule-based semantic integration

by Lister Allyson L, Lord Phillip, Pocock Matthew, Wipat Anil
Published 2010-06-01

Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud

by Flanagan Keith, Nakjang Sirintra, Hallinan Jennifer, Harwood Colin, Hirt Robert P., Pocock Matthew R., Wipat Anil
Published 2012-06-01

BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology

by Misirli Goksel, Wipat Anil, Mullen Joseph, James Katherine, Pocock Matthew, Smith Wendy, Allenby Nick, Hallinan Jennifer S.
Published 2013-06-01

An integrated dataset for in silico drug discovery

by Cockell Simon J, Weile Jochen, Lord Phillip, Wipat Claire, Andriychenko Dmytro, Pocock Matthew, Wilkinson Darren, Young Malcolm, Wipat Anil
Published 2010-12-01

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data

by Pocock Matthew R, Oinn Tom, Withers David, Owen Stuart, Soiland-Reyes Stian, Wassink Ingo, Velarde Giles, Castrillo Juan I, Li Peter, Goble Carole A, Oliver Stephen G, Kell Douglas B
Published 2008-08-01

Synthetic Biology Open Language (SBOL) Version 2.0.0

by Bartley Bryan, Beal Jacob, Clancy Kevin, Misirli Goksel, Roehner Nicholas, Oberortner Ernst, Pocock Matthew, Bissell Michael, Madsen Curtis, Nguyen Tramy, Zhang Zhen, Gennari John H., Myers Chris, Wipat Anil, Sauro Herbert
Published 2015-06-01

Synthetic Biology Open Language (SBOL) Version 2.1.0

by Beal Jacob, Cox Robert Sidney, Grünberg Raik, McLaughlin James, Nguyen Tramy, Bartley Bryan, Bissell Michael, Choi Kiri, Clancy Kevin, Macklin Chris, Madsen Curtis, Misirli Goksel, Oberortner Ernst, Pocock Matthew, Roehner Nicholas, Samineni Meher, Zhang Michael, Zhang Zhen, Zundel Zach, Gennari John H., Myers Chris, Sauro Herbert, Wipat Anil
Published 2016-09-01

Synthetic Biology Open Language (SBOL) Version 2.2.0

by Cox Robert Sidney, Madsen Curtis, McLaughlin James Alastair, Nguyen Tramy, Roehner Nicholas, Bartley Bryan, Beal Jacob, Bissell Michael, Choi Kiri, Clancy Kevin, Grünberg Raik, Macklin Chris, Misirli Goksel, Oberortner Ernst, Pocock Matthew, Samineni Meher, Zhang Michael, Zhang Zhen, Zundel Zach, Gennari John H., Myers Chris, Sauro Herbert, Wipat Anil
Published 2018-04-01

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0

by Cox Robert Sidney, Madsen Curtis, McLaughlin James, Nguyen Tramy, Roehner Nicholas, Bartley Bryan, Bhatia Swapnil, Bissell Mike, Clancy Kevin, Gorochowski Thomas, Grünberg Raik, Luna Augustin, Le Novère Nicolas, Pocock Matthew, Sauro Herbert, Sexton John T., Stan Guy-Bart, Tabor Jeffrey J., Voigt Christopher A., Zundel Zach, Myers Chris, Beal Jacob, Wipat Anil
Published 2018-03-01

Synthetic Biology Open Language (SBOL) Version 2.3

by Madsen Curtis, Goñi Moreno Angel, P Umesh, Palchick Zachary, Roehner Nicholas, Atallah Christian, Bartley Bryan, Choi Kiri, Cox Robert Sidney, Gorochowski Thomas, Grünberg Raik, Macklin Chris, McLaughlin James, Meng Xianwei, Nguyen Tramy, Pocock Matthew, Samineni Meher, Scott-Brown James, Tarter Ysis, Zhang Michael, Zhang Zhen, Zundel Zach, Beal Jacob, Bissell Michael, Clancy Kevin, Gennari John H., Misirli Goksel, Myers Chris, Oberortner Ernst, Sauro Herbert, Wipat Anil
Published 2019-06-01

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1

by Madsen Curtis, Goni Moreno Angel, Palchick Zachary, P Umesh, Roehner Nicholas, Bartley Bryan, Bhatia Swapnil, Bhakta Shyam, Bissell Mike, Clancy Kevin, Cox Robert Sidney, Gorochowski Thomas, Grunberg Raik, Luna Augustin, McLaughlin James, Nguyen Tramy, Le Novere Nicolas, Pocock Matthew, Sauro Herbert, Scott-Brown James, Sexton John T., Stan Guy-Bart, Tabor Jeffrey J., Voigt Christopher A., Zundel Zach, Myers Chris, Beal Jacob, Wipat Anil
Published 2019-06-01

Synthetic biology open language visual (SBOL visual) version 2.2

by Baig Hasan, Fontanarrosa Pedro, Kulkarni Vishwesh, McLaughlin James, Vaidyanathan Prashant, Bartley Bryan, Bhatia Swapnil, Bhakta Shyam, Bissell Michael, Clancy Kevin, Cox Robert Sidney, Moreno Angel Goñi, Gorochowski Thomas, Grunberg Raik, Luna Augustin, Madsen Curtis, Misirli Goksel, Nguyen Tramy, Le Novere Nicolas, Palchick Zachary, Pocock Matthew, Roehner Nicholas, Sauro Herbert, Scott-Brown James, Sexton John T., Stan Guy-Bart, Tabor Jeffrey J., Vilar Marta Vazquez, Voigt Christopher A., Wipat Anil, Zong David, Zundel Zach, Beal Jacob, Myers Chris
Published 2020-06-01

Synthetic biology open language visual (SBOL Visual) version 2.3

by Baig Hasan, Fontanarossa Pedro, Kulkarni Vishwesh, McLaughlin James, Vaidyanathan Prashant, Bartley Bryan, Bhakta Shyam, Bhatia Swapnil, Bissell Mike, Clancy Kevin, Cox Robert Sidney, Goñi Moreno Angel, Gorochowski Thomas, Grunberg Raik, Lee Jihwan, Luna Augustin, Madsen Curtis, Misirli Goksel, Nguyen Tramy, Le Novere Nicolas, Palchick Zachary, Pocock Matthew, Roehner Nicholas, Sauro Herbert, Scott-Brown James, Sexton John T., Stan Guy-Bart, Tabor Jeffrey J., Terry Logan, Vazquez Vilar Marta, Voigt Christopher A., Wipat Anil, Zong David, Zundel Zach, Beal Jacob, Myers Chris
Published 2021-06-01

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*

by Katayama Toshiaki, Arakawa Kazuharu, Nakao Mitsuteru, Ono Keiichiro, Aoki-Kinoshita Kiyoko F, Yamamoto Yasunori, Yamaguchi Atsuko, Kawashima Shuichi, Chun Hong-Woo, Aerts Jan, Aranda Bruno, Barboza Lord, Bonnal Raoul JP, Bruskiewich Richard, Bryne Jan C, Fernández José M, Funahashi Akira, Gordon Paul MK, Goto Naohisa, Groscurth Andreas, Gutteridge Alex, Holland Richard, Kano Yoshinobu, Kawas Edward A, Kerhornou Arnaud, Kibukawa Eri, Kinjo Akira R, Kuhn Michael, Lapp Hilmar, Lehvaslaiho Heikki, Nakamura Hiroyuki, Nakamura Yasukazu, Nishizawa Tatsuya, Nobata Chikashi, Noguchi Tamotsu, Oinn Thomas M, Okamoto Shinobu, Owen Stuart, Pafilis Evangelos, Pocock Matthew, Prins Pjotr, Ranzinger René, Reisinger Florian, Salwinski Lukasz, Schreiber Mark, Senger Martin, Shigemoto Yasumasa, Standley Daron M, Sugawara Hideaki, Tashiro Toshiyuki, Trelles Oswaldo, Vos Rutger A, Wilkinson Mark D, York William, Zmasek Christian M, Asai Kiyoshi, Takagi Toshihisa
Published 2010-08-01

Synthetic Biology Open Language Visual (SBOL Visual), version 1.0.0

by Quinn, Jacqueline, Beal, Jacob, Bhatia, Swapnil, Cai, Patrick, Chen, Joanna, Clancy, Kevin, Hillson, Nathan, Galdzicki, Michal, Maheshwari, Akshay, P, Umesh, Pocock, Matthew, Rodriguez, Cesar, Stan, Guy-Bart, Endy, Drew
Published 2013

BBF RFC 108: Synthetic Biology Open Language (SBOL) Version 2.0.0

by Bartley, Bryan, Beal, Jacob, Clancy, Kevin, Misirli, Goksel, Roehner, Nicholas, Sauro, Herbert, Oberortner, Ernst, Madsen, Curtis, Pocock, Matthew, Wipat, Anil, Nguyen, Tramy, Zhang, Zhen, Myers, Chris, Gennari, John H., Bissell, Michael
Published 2015

BBF RFC 112: Synthetic Biology Open Language (SBOL) Version 2.1.0

by Beal, Jacob, Cox, Robert Sidney, Grünberg, Raik, McLaughlin, James, Nguyen, Tramy, Macklin, Chris, Bissell, Michael, Madsen, Curtis, Roehner, Nicholas, Oberortner, Ernst, Misirli, Goksel, Clancy, Kevin, Pocock, Matthew, Zhang, Zhen, Myers, Chris, Zhang, Michael, Samineni, Meher, Zundel, Zach, Bartley, Bryan, Choi, Kiri, Gennari, John H., Sauro, Herbert
Published 2016

Title: Synthetic Biology Open Language (SBOL) Version 1.0.0

by Wipat, Anil, Villalobos, Alan, Stan, Guy-Bart, Smith, Trevor, Sauro, Herbert, Roehner, Nicholas, Pocock, Matthew, Plahar, Hector, Peccoud, Jean, Myers, Chris, Misirli, Goksel, Madsen, Curtis, Lux, Matthew, Kuchinsky, Allan, Ham, Timothy, Grünberg, Raik, Gennari, John, Endy, Drew, Drory, Omri, Densmore, Douglas, Chandran, Deepak, Beal, Jacob, Anderson, J. Christopher, Adler, Aaron, Adam, Laura, Rodriguez, Cesar, Wilson, Mandy, Galdzicki, Michal
Published 2011

Synthetic Biology Open Language (SBOL) Version 1.1.0

by Galdzicki, Michal, Wilson, Mandy, Rodriguez, Cesar A., Pocock, Matthew R., Oberortner, Ernst, Adam, Laura, Adler, Aaron, Anderson, J. Christopher, Beal, Jacob, Cai, Yizhi, Chandran, Deepak, Densmore, Douglas, Drory, Omri A., Endy, Drew, Gennari, John H., Grünberg, Raik, Ham, Timothy S., Hillson, Nathan J., Johnson, Jeffrey D., Kuchinsky, Allan, Lux, Matthew W., Madsen, Curtis, Misirli, Goksel, Myers, Chris J., Olguin, Carlos, Peccoud, Jean, Plahar, Hector, Platt, Darren, Roehner, Nicholas, Sirin, Evren, Smith, Trevor F., Stan, Guy-Bart, Villabos, Alan, Wipat, Anil, Sauro, Herbert M.
Published 2012