Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors

by Leah L. Weber, Mohammed El-Kebir
Published 2021-07-01

Parsimonious Clone Tree Integration in cancer

by Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir
Published 2022-03-01

Implications of non-uniqueness in phylogenetic deconvolution of bulk DNA samples of tumors

by Yuanyuan Qi, Dikshant Pradhan, Mohammed El-Kebir
Published 2019-09-01

Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples

by Chuanyi Zhang, Mohammed El-Kebir, Idoia Ochoa
Published 2021-04-01

Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment

by Mohammed El-Kebir, Jaap Heringa, Gunnar W. Klau
Published 2015-11-01

Novel High Negative Chromatic Dispersion Photonic Crystal Fiber with Low Confinement Loss

by OUADAH Mohammed Chamse Eddine, CHIKH-BLED Mohammed El Kébir
Published 2016-05-01

Jumper enables discontinuous transcript assembly in coronaviruses

by Palash Sashittal, Chuanyi Zhang, Jian Peng, Mohammed El-Kebir
Published 2021-11-01

eXamine: Visualizing annotated networks in Cytoscape [version 2; referees: 2 approved, 2 approved with reservations]

by Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir
Published 2018-07-01

Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors.

by Leah L Weber, Chuanyi Zhang, Idoia Ochoa, Mohammed El-Kebir
Published 2023-10-01

PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors.

by Leah L Weber, Nuraini Aguse, Nicholas Chia, Mohammed El-Kebir
Published 2020-10-01

eXamine: Visualizing annotated networks in Cytoscape [version 1; referees: 1 approved, 2 approved with reservations]

by Philipp Spohr, Kasper Dinkla, Gunnar W. Klau, Mohammed El-Kebir
Published 2018-04-01

CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data.

by Zubair Lalani, Gillian Chu, Silas Hsu, Shaw Kagawa, Michael Xiang, Simone Zaccaria, Mohammed El-Kebir
Published 2022-10-01

Complexity and algorithms for copy-number evolution problems

by Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira
Published 2017-05-01

Transcriptional Profiling of Porcine HCC Xenografts Provides Insights Into Tumor Cell Microenvironment Signaling

by Shovik S. Patel, Amitha Sandur, Mohammed El-Kebir, Ron C. Gaba, Lawrence B. Schook, Lawrence B. Schook, Lawrence B. Schook, Kyle M. Schachtschneider, Kyle M. Schachtschneider, Kyle M. Schachtschneider
Published 2021-04-01