Mapping whole genome shotgun sequence and variant calling in mammalian species without their reference genomes [v2; ref status: indexed, http://f1000r.es/2x3]

by Ted Kalbfleisch, Michael P Heaton
Published 2014-02-01

Association of TLR2 haplotypes encoding Q650 with reduced susceptibility to ovine Johne’s disease in Turkish sheep

by Yalçın Yaman, Ramazan Aymaz, Murat Keleş, Veysel Bay, Cemal Ün, Michael P. Heaton
Published 2021-03-01

Classification of small ruminant lentivirus subtype A2, subgroups 1 and 2 based on whole genome comparisons and complex recombination patterns [version 2; peer review: 2 approved,...

by Aspen M. Workman, Michael L. Clawson, Michael P. Heaton, Aaron M. Dickey, Timothy P. L. Smith
Published 2021-07-01

Impact of Four Ovine <i>TMEM154</i> Haplotypes on Ewes during Multiyear Lentivirus Exposure

by Brad A. Freking, Tom W. Murphy, Carol G. Chitko-McKown, Aspen M. Workman, Michael P. Heaton
Published 2022-11-01

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with high-altitude pulmonary hypertension [version 1; referees: 2 approved]

by Michael P. Heaton, Timothy P.L. Smith, Jacky K. Carnahan, Veronica Basnayake, Jiansheng Qiu, Barry Simpson, Theodore S. Kalbfleisch
Published 2016-08-01

Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension [version 2; referees: 2 approved]

by Michael P. Heaton, Timothy P.L. Smith, Jacky K. Carnahan, Veronica Basnayake, Jiansheng Qiu, Barry Simpson, Theodore S. Kalbfleisch
Published 2016-10-01

A SNP resource for studying North American moose [version 1; referees: 2 approved, 1 approved with reservations]

by Theodore S. Kalbfleisch, Brenda M. Murdoch, Timothy P. L. Smith, James D. Murdoch, Michael P. Heaton, Stephanie D. McKay
Published 2018-01-01

Using triallelic SNPs for determining parentage in North American yak (Bos grunniens) and estimating cattle (B. taurus) introgression [version 2; peer review: 2 approved]

by Ted Kalbfleisch, Jessica L. Petersen, R. G. Tait Jr., Jiansheng Qiu, Veronica Basnayake, Peter H. Hackett, Michael P. Heaton
Published 2020-10-01

Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity [version 1; referees: 2 approved]

by Michael P. Heaton, Timothy P.L. Smith, Bradley A. Freking, Aspen M. Workman, Gary L. Bennett, Jacky K. Carnahan, Theodore S. Kalbfleisch
Published 2017-08-01

A bovine CD18 signal peptide variant with increased binding activity to Mannheimia hemolytica leukotoxin [version 1; referees: 2 approved]

by Aspen M. Workman, Carol G. Chitko-McKown, Timothy P. L. Smith, Gary L. Bennett, Theodore S. Kalbfleisch, Veronica Basnayake, Michael P. Heaton
Published 2018-12-01

Association of a bovine prion gene haplotype with atypical BSE.

by Michael L Clawson, Juergen A Richt, Thierry Baron, Anne-Gaëlle Biacabe, Stefanie Czub, Michael P Heaton, Timothy P L Smith, William W Laegreid
Published 2008-01-01

Using whole genome sequence to compare variant callers and breed differences of US sheep

by Morgan R. Stegemiller, Reid R. Redden, David R. Notter, Todd Taylor, J. Bret Taylor, Noelle E. Cockett, Michael P. Heaton, Theodore S. Kalbfleisch, Brenda M. Murdoch
Published 2023-01-01

Evaluating Large Spontaneous Deletions in a Bovine Cell Line Selected for Bovine Viral Diarrhea Virus Resistance

by Aspen M. Workman, Michael P. Heaton, Dennis A. Webster, Gregory P. Harhay, Theodore S. Kalbfleisch, Timothy P. L. Smith, Shollie M. Falkenberg, Daniel F. Carlson, Tad S. Sonstegard
Published 2021-10-01

Genetic testing for TMEM154 mutations associated with lentivirus susceptibility in sheep.

by Michael P Heaton, Theodore S Kalbfleisch, Dustin T Petrik, Barry Simpson, James W Kijas, Michael L Clawson, Carol G Chitko-McKown, Gregory P Harhay, Kreg A Leymaster, International Sheep Genomics Consortium
Published 2013-01-01

Development and characterization of a high density SNP genotyping assay for cattle.

by Lakshmi K Matukumalli, Cynthia T Lawley, Robert D Schnabel, Jeremy F Taylor, Mark F Allan, Michael P Heaton, Jeff O'Connell, Stephen S Moore, Timothy P L Smith, Tad S Sonstegard, Curtis P Van Tassell
Published 2009-01-01

Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assemblies

by Alexander S. Leonard, Danang Crysnanto, Zih-Hua Fang, Michael P. Heaton, Brian L. Vander Ley, Carolina Herrera, Heinrich Bollwein, Derek M. Bickhart, Kristen L. Kuhn, Timothy P. L. Smith, Benjamin D. Rosen, Hubert Pausch
Published 2022-05-01

Gaur genome reveals expansion of sperm odorant receptors in domesticated cattle

by Wai Yee Low, Benjamin D. Rosen, Yan Ren, Derek M. Bickhart, Thu-Hien To, Fergal J. Martin, Konstantinos Billis, Tad S. Sonstegard, Shawn T. Sullivan, Stefan Hiendleder, John L. Williams, Michael P. Heaton, Timothy P. L. Smith
Published 2022-05-01

Evaluation of EPAS1 variants for association with bovine congestive heart failure [version 1; peer review: 2 approved]

by Michael P. Heaton, Adam S. Bassett, Katherine J. Whitman, Greta M. Krafsur, Sang In Lee, Jaden M. Carlson, Halden J. Clark, Helen R. Smith, Madeline C. Pelster, Veronica Basnayake, Dale M. Grotelueschen, Brian L. Vander Ley
Published 2019-07-01

Cardiopulmonary remodeling in fattened beef cattle: a naturally occurring large animal model of obesity-associated pulmonary hypertension with left heart disease

by Greta M. Krafsur, Joseph M. Neary, Franklyn Garry, Timothy Holt, Daniel H. Gould, Gary L. Mason, Milton G. Thomas, R. Mark Enns, Rubin M. Tuder, Michael P. Heaton, R. Dale Brown, Kurt R. Stenmark
Published 2019-01-01

SNPs for parentage testing and traceability in globally diverse breeds of sheep.

by Michael P Heaton, Kreg A Leymaster, Theodore S Kalbfleisch, James W Kijas, Shannon M Clarke, John McEwan, Jillian F Maddox, Veronica Basnayake, Dustin T Petrik, Barry Simpson, Timothy P L Smith, Carol G Chitko-McKown, International Sheep Genomics Consortium
Published 2014-01-01