Dealing with data: a case study on information and data management literacy.

by Melissa A Haendel, Nicole A Vasilevsky, Jacqueline A Wirz
Published 2012-01-01

Reproducible and reusable research: are journal data sharing policies meeting the mark?

by Nicole A. Vasilevsky, Jessica Minnier, Melissa A. Haendel, Robin E. Champieux
Published 2017-04-01

An analysis and metric of reusable data licensing practices for biomedical resources.

by Seth Carbon, Robin Champieux, Julie A McMurry, Lilly Winfree, Letisha R Wyatt, Melissa A Haendel
Published 2019-01-01

Linking human diseases to animal models using ontology-based phenotype annotation.

by Nicole L Washington, Melissa A Haendel, Christopher J Mungall, Michael Ashburner, Monte Westerfield, Suzanna E Lewis
Published 2009-11-01

An evaluation of GPT models for phenotype concept recognition

by Tudor Groza, Harry Caufield, Dylan Gration, Gareth Baynam, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall, Justin T. Reese
Published 2024-01-01

Harnessing Consumer Wearable Digital Biomarkers for Individualized Recognition of Postpartum Depression Using the All of Us Research Program Data Set: Cross-Sectional Study

by Eric Hurwitz, Zachary Butzin-Dozier, Hiral Master, Shawn T O'Neil, Anita Walden, Michelle Holko, Rena C Patel, Melissa A Haendel
Published 2024-05-01

On the reproducibility of science: unique identification of research resources in the biomedical literature

by Nicole A. Vasilevsky, Matthew H. Brush, Holly Paddock, Laura Ponting, Shreejoy J. Tripathy, Gregory M. LaRocca, Melissa A. Haendel
Published 2013-09-01

From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences.

by Anne E Thessen, Paul Bogdan, David J Patterson, Theresa M Casey, César Hinojo-Hinojo, Orlando de Lange, Melissa A Haendel
Published 2021-03-01

Ensuring a safe(r) harbor: Excising personally identifiable information from structured electronic health record data

by Emily R. Pfaff, Melissa A. Haendel, Kristin Kostka, Adam Lee, Emily Niehaus, Matvey B. Palchuk, Kellie Walters, Christopher G. Chute
Published 2022-01-01

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond

by Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu, Charles Schmitt, Cynthia J. Grondin, Nicole Vasilevsky, Julie A. McMurry, Peter N. Robinson, Christopher J. Mungall, Melissa A. Haendel
Published 2023-02-01

Transforming the study of organisms: Phenomic data models and knowledge bases.

by Anne E Thessen, Ramona L Walls, Lars Vogt, Jessica Singer, Robert Warren, Pier Luigi Buttigieg, James P Balhoff, Christopher J Mungall, Deborah L McGuinness, Brian J Stucky, Matthew J Yoder, Melissa A Haendel
Published 2020-11-01

Association of post-COVID phenotypic manifestations with new-onset psychiatric disease

by Ben Coleman, Elena Casiraghi, Tiffany J. Callahan, Hannah Blau, Lauren E. Chan, Bryan Laraway, Kevin B. Clark, Yochai Re’em, Ken R. Gersing, Kenneth J. Wilkins, Nomi L. Harris, Giorgio Valentini, Melissa A. Haendel, Justin T. Reese, Peter N. Robinson
Published 2024-06-01

A unified anatomy ontology of the vertebrate skeletal system.

by Wasila M Dahdul, James P Balhoff, David C Blackburn, Alexander D Diehl, Melissa A Haendel, Brian K Hall, Hilmar Lapp, John G Lundberg, Christopher J Mungall, Martin Ringwald, Erik Segerdell, Ceri E Van Slyke, Matthew K Vickaryous, Monte Westerfield, Paula M Mabee
Published 2012-01-01

Ankle Fracture and Length of Stay in US Adult Population Using Data From the National COVID Cohort Collaborative

by Charles C. Pitts MD, Eli B. Levitt MS, David A. Patch MD, Alexander K. Mihas BS, Alfredo Terrero MD, Melissa A. Haendel PhD, Christopher G. Chute MD, Brent A. Ponce MD, Steven M. Theiss MD, Clay A. Spitler MD, Michael D. Johnson MD
Published 2022-02-01

The Resource Identification Initiative: A cultural shift in publishing [version 2; referees: 2 approved]

by Anita Bandrowski, Matthew Brush, Jeffery S. Grethe, Melissa A. Haendel, David N. Kennedy, Sean Hill, Patrick R. Hof, Maryann E. Martone, Maaike Pols, Serena Tan, Nicole Washington, Elena Zudilova-Seinstra, Nicole Vasilevsky, Resource Identification Initiative Members are listed here: https://www.force11.org/node/4463/members
Published 2015-11-01

The Resource Identification Initiative: A cultural shift in publishing [v1; ref status: indexed, http://f1000r.es/5fj]

by Anita Bandrowski, Matthew Brush, Jeffery S. Grethe, Melissa A. Haendel, David N. Kennedy, Sean Hill, Patrick R. Hof, Maryann E. Martone, Maaike Pols, Serena Tan, Nicole Washington, Elena Zudilova-Seinstra, Nicole Vasilevsky, Resource Identification Initiative Members are listed here: https://www.force11.org/node/4463/members
Published 2015-05-01

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

by Justin T. Reese, Deepak Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon, Kent A. Shefchek, Benjamin M. Good, James P. Balhoff, Tommaso Fontana, Hannah Blau, Nicolas Matentzoglu, Nomi L. Harris, Monica C. Munoz-Torres, Melissa A. Haendel, Peter N. Robinson, Marcin P. Joachimiak, Christopher J. Mungall
Published 2021-01-01

Phenopacket-tools: Building and validating GA4GH Phenopackets.

by Daniel Danis, Julius O B Jacobsen, Alex H Wagner, Tudor Groza, Martha A Beckwith, Lauren Rekerle, Leigh C Carmody, Justin Reese, Harshad Hegde, Markus S Ladewig, Berthold Seitz, Monica Munoz-Torres, Nomi L Harris, Jordi Rambla, Michael Baudis, Christopher J Mungall, Melissa A Haendel, Peter N Robinson
Published 2023-01-01

Unifying the identification of biomedical entities with the Bioregistry

by Charles Tapley Hoyt, Meghan Balk, Tiffany J. Callahan, Daniel Domingo-Fernández, Melissa A. Haendel, Harshad B. Hegde, Daniel S. Himmelstein, Klas Karis, John Kunze, Tiago Lubiana, Nicolas Matentzoglu, Julie McMurry, Sierra Moxon, Christopher J. Mungall, Adriano Rutz, Deepak R. Unni, Egon Willighagen, Donald Winston, Benjamin M. Gyori
Published 2022-11-01

Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals.

by Robert E Druzinsky, James P Balhoff, Alfred W Crompton, James Done, Rebecca Z German, Melissa A Haendel, Anthony Herrel, Susan W Herring, Hilmar Lapp, Paula M Mabee, Hans-Michael Muller, Christopher J Mungall, Paul W Sternberg, Kimberly Van Auken, Christopher J Vinyard, Susan H Williams, Christine E Wall
Published 2016-01-01