Quantitative modeling of a gene's expression from its intergenic sequence.

by Md Abul Hassan Samee, Saurabh Sinha
Published 2014-03-01

Systematic identification of non-canonical transcription factor motifs

by Luis Chumpitaz-Diaz, Md. Abul Hassan Samee, Katherine S. Pollard
Published 2021-08-01

Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression.

by Xin He, Md Abul Hassan Samee, Charles Blatti, Saurabh Sinha
Published 2010-09-01

DeepBend: An interpretable model of DNA bendability

by Samin Rahman Khan, Sadman Sakib, M. Sohel Rahman, Md. Abul Hassan Samee
Published 2023-02-01

Dual-Mode Tumor Imaging Using Probes That Are Responsive to Hypoxia-Induced Pathological Conditions

by S. A. Amali S. Subasinghe, Robia G. Pautler, Md. Abul Hassan Samee, Jason T. Yustein, Matthew J. Allen
Published 2022-06-01

scGIST: gene panel design for spatial transcriptomics with prioritized gene sets

by Mashrur Ahmed Yafi, Md. Hasibul Husain Hisham, Francisco Grisanti, James F. Martin, Atif Rahman, Md. Abul Hassan Samee
Published 2024-02-01

Decoding the PITX2-controlled genetic network in atrial fibrillation

by Jeffrey D. Steimle, Francisco J. Grisanti Canozo, Minjun Park, Zachary A. Kadow, Md. Abul Hassan Samee, James F. Martin
Published 2022-06-01

Multinomial Convolutions for Joint Modeling of Regulatory Motifs and Sequence Activity Readouts

by Minjun Park, Salvi Singh, Samin Rahman Khan, Mohammed Abid Abrar, Francisco Grisanti, M. Sohel Rahman, Md. Abul Hassan Samee
Published 2022-09-01

Quantitative Measurement and Thermodynamic Modeling of Fused Enhancers Support a Two-Tiered Mechanism for Interpreting Regulatory DNA

by Md. Abul Hassan Samee, Tara Lydiard-Martin, Kelly M. Biette, Ben J. Vincent, Meghan D. Bragdon, Kelly B. Eckenrode, Zeba Wunderlich, Javier Estrada, Saurabh Sinha, Angela H. DePace
Published 2017-10-01

Increased iron uptake by splenic hematopoietic stem cells promotes TET2-dependent erythroid regeneration

by Yu-Jung Tseng, Yuki Kageyama, Rebecca L. Murdaugh, Ayumi Kitano, Jong Hwan Kim, Kevin A. Hoegenauer, Jonathan Tiessen, Mackenzie H. Smith, Hidetaka Uryu, Koichi Takahashi, James F. Martin, Md Abul Hassan Samee, Daisuke Nakada
Published 2024-01-01

Assessing modularity of developmental enhancers in Drosophila melanogaster

by Martin, Tara Laine
Published 2014