Hidden Resistances: How Routine Whole-Genome Sequencing Uncovered an Otherwise Undetected blaNDM-1 Gene in Vibrio alginolyticus from Imported Seafood

by Jacqueline M. Morris, Karolina Mercoulia, Mary Valcanis, Claire L. Gorrie, Norelle L. Sherry, Benjamin P. Howden
Published 2023-02-01

A review of the public health management of shigellosis in Australia in the era of culture‐independent diagnostic testing

by Alex Y.C. Tai, Marion Easton, Jess Encena, Jessica Rotty, Mary Valcanis, Benjamin P. Howden, Simon Slota‐Kan, Joy Gregory
Published 2016-12-01

Identification of the first erm(B)-positive Campylobacter jejuni and Campylobacter coli associated with novel multidrug resistance genomic islands in Australia

by Rhiannon L. Wallace, Dieter Bulach, Mary Valcanis, Benjamin G. Polkinghorne, Nevada Pingault, Anastasia Stylianopoulos, Rodney C. Givney, Kathryn Glass, Martyn D. Kirka
Published 2020-12-01

Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing Escherichia coli in New South Wales, Australia

by Eby M. Sim, Ryan Kim, Mailie Gall, Alicia Arnott, Peter Howard, Mary Valcanis, Benjamin P. Howden, Vitali Sintchenko, Vitali Sintchenko, Vitali Sintchenko
Published 2021-12-01

Molecular characterization of Campylobacter spp. recovered from beef, chicken, lamb and pork products at retail in Australia.

by Rhiannon L Wallace, Dieter M Bulach, Amy V Jennison, Mary Valcanis, Angus McLure, James J Smith, Trudy Graham, Themy Saputra, Simon Firestone, Sally Symes, Natasha Waters, Anastasia Stylianopoulos, Martyn D Kirk, Kathryn Glass
Published 2020-01-01

An ISO-certified genomics workflow for identification and surveillance of antimicrobial resistance

by Norelle L. Sherry, Kristy A. Horan, Susan A. Ballard, Anders Gonҫalves da Silva, Claire L. Gorrie, Mark B. Schultz, Kerrie Stevens, Mary Valcanis, Michelle L. Sait, Timothy P. Stinear, Benjamin P. Howden, Torsten Seemann
Published 2023-01-01

Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia

by Danielle J. Ingle, Rebecca L. Ambrose, Sarah L. Baines, Sebastian Duchene, Anders Gonçalves da Silva, Darren Y. J. Lee, Miriam Jones, Mary Valcanis, George Taiaroa, Susan A. Ballard, Martyn D. Kirk, Benjamin P. Howden, Jaclyn S. Pearson, Deborah A. Williamson
Published 2021-08-01

Multistate Outbreak of Salmonella enterica Serovar Heidelberg with Unidentified Source, Australia, 2018–2019

by Elenor J. Kerr, Russell Stafford, Irani U. Rathnayake, Rikki M.A. Graham, Emily Fearnley, Joy Gregory, Keira Glasgow, Rose Wright, Vitali Sintchenko, Qinning Wang, Peter Howard, Lex E.X. Leong, Mary Valcanis, William Pitchers, Stephen B. Lambert, Amy V. Jennison
Published 2022-01-01

Risk factors for campylobacteriosis in Australia: outcomes of a 2018–2019 case–control study

by Danielle M. Cribb, Liana Varrone, Rhiannon L. Wallace, Angus T. McLure, James J. Smith, Russell J. Stafford, Dieter M. Bulach, Linda A. Selvey, Simon M. Firestone, Nigel P. French, Mary Valcanis, Emily J. Fearnley, Timothy S. Sloan-Gardner, Trudy Graham, Kathryn Glass, Martyn D. Kirk
Published 2022-06-01

Spatial-temporal and phylogenetic analyses of epidemiologic data to help understand the modes of transmission of endemic typhoid fever in Samoa.

by Michael J Sikorski, Jianguo Ma, Tracy H Hazen, Sachin N Desai, Siaosi Tupua, Susana Nimarota-Brown, Michelle Sialeipata, Savitra Rambocus, Susan A Ballard, Mary Valcanis, Robert E Thomsen, Roy M Robins-Browne, Benjamin P Howden, Take K Naseri, Myron M Levine, David A Rasko
Published 2022-10-01

Persistence of Rare Salmonella Typhi Genotypes Susceptible to First-Line Antibiotics in the Remote Islands of Samoa

by Michael J. Sikorski, Tracy H. Hazen, Sachin N. Desai, Susana Nimarota-Brown, Siaosi Tupua, Michelle Sialeipata, Savitra Rambocus, Danielle J. Ingle, Sebastian Duchene, Susan A. Ballard, Mary Valcanis, Sara Zufan, Jianguo Ma, Jason W. Sahl, Mailis Maes, Gordon Dougan, Robert E. Thomsen, Roy M. Robins-Browne, Benjamin P. Howden, Take K. Naseri, Myron M. Levine, David A. Rasko
Published 2022-10-01

South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study.

by Hao Chung The, Maia A Rabaa, Duy Pham Thanh, Niall De Lappe, Martin Cormican, Mary Valcanis, Benjamin P Howden, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J Mason, To Nguyen Thi Nguyen, Duong Vu Thuy, Corinne N Thompson, Nguyen Phu Huong Lan, Phat Voong Vinh, Tuyen Ha Thanh, Paul Turner, Poda Sar, Guy Thwaites, Nicholas R Thomson, Kathryn E Holt, Stephen Baker
Published 2016-08-01

Dissecting the molecular evolution of fluoroquinolone-resistant Shigella sonnei

by Hao Chung The, Christine Boinett, Duy Pham Thanh, Claire Jenkins, Francois-Xavier Weill, Benjamin P. Howden, Mary Valcanis, Niall De Lappe, Martin Cormican, Sonam Wangchuk, Ladaporn Bodhidatta, Carl J. Mason, To Nguyen Thi Nguyen, Tuyen Ha Thanh, Vinh Phat Voong, Vu Thuy Duong, Phu Huong Lan Nguyen, Paul Turner, Ryan Wick, Pieter-Jan Ceyssens, Guy Thwaites, Kathryn E. Holt, Nicholas R. Thomson, Maia A. Rabaa, Stephen Baker
Published 2019-10-01

Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes

by Megan E Carey, Zoe A Dyson, Danielle J Ingle, Afreenish Amir, Mabel K Aworh, Marie Anne Chattaway, Ka Lip Chew, John A Crump, Nicholas A Feasey, Benjamin P Howden, Karen H Keddy, Mailis Maes, Christopher M Parry, Sandra Van Puyvelde, Hattie E Webb, Ayorinde Oluwatobiloba Afolayan, Anna P Alexander, Shalini Anandan, Jason R Andrews, Philip M Ashton, Buddha Basnyat, Ashish Bavdekar, Isaac I Bogoch, John D Clemens, Kesia Esther da Silva, Anuradha De, Joep de Ligt, Paula Lucia Diaz Guevara, Christiane Dolecek, Shanta Dutta, Marthie M Ehlers, Louise Francois Watkins, Denise O Garrett, Gauri Godbole, Melita A Gordon, Andrew R Greenhill, Chelsey Griffin, Madhu Gupta, Rene S Hendriksen, Robert S Heyderman, Yogesh Hooda, Juan Carlos Hormazabal, Odion O Ikhimiukor, Junaid Iqbal, Jobin John Jacob, Claire Jenkins, Dasaratha Ramaiah Jinka, Jacob John, Gagandeep Kang, Abdoulie Kanteh, Arti Kapil, Abhilasha Karkey, Samuel Kariuki, Robert A Kingsley, Roshine Mary Koshy, AC Lauer, Myron M Levine, Ravikumar Kadahalli Lingegowda, Stephen P Luby, Grant Austin Mackenzie, Tapfumanei Mashe, Chisomo Msefula, Ankur Mutreja, Geetha Nagaraj, Savitha Nagaraj, Satheesh Nair, Take K Naseri, Susana Nimarota-Brown, Elisabeth Njamkepo, Iruka N Okeke, Sulochana Putli Bai Perumal, Andrew J Pollard, Agila Kumari Pragasam, Firdausi Qadri, Farah N Qamar, Sadia Isfat Ara Rahman, Savitra Devi Rambocus, David A Rasko, Pallab Ray, Roy Robins-Browne, Temsunaro Rongsen-Chandola, Jean Pierre Rutanga, Samir K Saha, Senjuti Saha, Karnika Saigal, Mohammad Saiful Islam Sajib, Jessica C Seidman, Jivan Shakya, Varun Shamanna, Jayanthi Shastri, Rajeev Shrestha, Sonia Sia, Michael J Sikorski, Ashita Singh, Anthony M Smith, Kaitlin A Tagg, Dipesh Tamrakar, Arif Mohammed Tanmoy, Maria Thomas, Mathew S Thomas, Robert Thomsen, Nicholas R Thomson, Siaosi Tupua, Krista Vaidya, Mary Valcanis, Balaji Veeraraghavan, François-Xavier Weill, Jackie Wright, Gordon Dougan, Silvia Argimón, Jacqueline A Keane, David M Aanensen, Stephen Baker, Kathryn E Holt, Global Typhoid Genomics Consortium Group Authorship
Published 2023-09-01