Getting started in text mining: part two.

by Andrey Rzhetsky, Michael Seringhaus, Mark B Gerstein
Published 2009-07-01

Whole-genome analysis of papillary kidney cancer finds significant noncoding alterations.

by Shantao Li, Brian M Shuch, Mark B Gerstein
Published 2017-03-01

Using sigLASSO to optimize cancer mutation signatures jointly with sampling likelihood

by Shantao Li, Forrest W. Crawford, Mark B. Gerstein
Published 2020-07-01

Integrated assessment of genomic correlates of protein evolutionary rate.

by Yu Xia, Eric A Franzosa, Mark B Gerstein
Published 2009-06-01

Landscape and variation of novel retroduplications in 26 human populations.

by Yan Zhang, Shantao Li, Alexej Abyzov, Mark B Gerstein
Published 2017-06-01

Getting started in gene orthology and functional analysis.

by Gang Fang, Nitin Bhardwaj, Rebecca Robilotto, Mark B Gerstein
Published 2010-03-01

Small RNAs originated from pseudogenes: cis- or trans-acting?

by Xingyi Guo, Zhaolei Zhang, Mark B Gerstein, Deyou Zheng
Published 2009-07-01

SVFX: a machine learning framework to quantify the pathogenicity of structural variants

by Sushant Kumar, Arif Harmanci, Jagath Vytheeswaran, Mark B. Gerstein
Published 2020-11-01

Predicting changes in protein thermodynamic stability upon point mutation with deep 3D convolutional neural networks.

by Bian Li, Yucheng T Yang, John A Capra, Mark B Gerstein
Published 2020-11-01

Structured digital tables on the Semantic Web: toward a structured digital literature

by Kei‐Hoi Cheung, Matthias Samwald, Raymond K Auerbach, Mark B Gerstein
Published 2010-01-01

Analysis of combinatorial regulation: scaling of partnerships between regulators with the number of governed targets.

by Nitin Bhardwaj, Matthew B Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B Gerstein
Published 2010-05-01

Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants.

by Jiang Du, Robert D Bjornson, Zhengdong D Zhang, Yong Kong, Michael Snyder, Mark B Gerstein
Published 2009-07-01

Loregic: a method to characterize the cooperative logic of regulatory factors.

by Daifeng Wang, Koon-Kiu Yan, Cristina Sisu, Chao Cheng, Joel Rozowsky, William Meyerson, Mark B Gerstein
Published 2015-04-01

TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements.

by Fabio Cp Navarro, Jacob Hoops, Lauren Bellfy, Eliza Cerveira, Qihui Zhu, Chengsheng Zhang, Charles Lee, Mark B Gerstein
Published 2019-08-01

Measuring the evolutionary rewiring of biological networks.

by Chong Shou, Nitin Bhardwaj, Hugo Y K Lam, Koon-Kiu Yan, Philip M Kim, Michael Snyder, Mark B Gerstein
Published 2011-01-01

Network propagation-based prioritization of long tail genes in 17 cancer types

by Hussein Mohsen, Vignesh Gunasekharan, Tao Qing, Montrell Seay, Yulia Surovtseva, Sahand Negahban, Zoltan Szallasi, Lajos Pusztai, Mark B. Gerstein
Published 2021-10-01

Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches.

by Ghia M Euskirchen, Raymond K Auerbach, Eugene Davidov, Tara A Gianoulis, Guoneng Zhong, Joel Rozowsky, Nitin Bhardwaj, Mark B Gerstein, Michael Snyder
Published 2011-03-01

Estimation of Bedtimes of Reddit Users: Integrated Analysis of Time Stamps and Surveys

by William U Meyerson, Sarah K Fineberg, Ye Kyung Song, Adam Faber, Garrett Ash, Fernanda C Andrade, Philip Corlett, Mark B Gerstein, Rick H Hoyle
Published 2023-01-01

Cross-platform transcriptomic profiling of the response to recombinant human erythropoietin

by Guan Wang, Traci Kitaoka, Ali Crawford, Qian Mao, Andrew Hesketh, Fergus M. Guppy, Garrett I. Ash, Jason Liu, Mark B. Gerstein, Yannis P. Pitsiladis
Published 2021-11-01

High-resolution copy-number variation map reflects human olfactory receptor diversity and evolution.

by Yehudit Hasin, Tsviya Olender, Miriam Khen, Claudia Gonzaga-Jauregui, Philip M Kim, Alexander Eckehart Urban, Michael Snyder, Mark B Gerstein, Doron Lancet, Jan O Korbel
Published 2008-11-01