Genetic features of the marine polychaete Sirsoe methanicola from metagenomic data

by Shen Jean Lim, Luke R. Thompson, Luke R. Thompson, Kelly D. Goodwin
Published 2023-01-01

Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies

by Shen Jean Lim, Luke R. Thompson
Published 2021-07-01

Optimizing an enclosed bead beating extraction method for microbial and fish environmental DNA

by Sean R. Anderson, Luke R. Thompson
Published 2022-03-01

Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage.

by Luke R Thompson, Qinglu Zeng, Sallie W Chisholm
Published 2016-01-01

DNA Sequencing as a Tool to Monitor Marine Ecological Status

by Kelly D. Goodwin, Luke R. Thompson, Luke R. Thompson, Bernardo Duarte, Tim Kahlke, Andrew R. Thompson, João C. Marques, Isabel Caçador
Published 2017-05-01

Bio-GO-SHIP: The Time Is Right to Establish Global Repeat Sections of Ocean Biology

by Sophie Clayton, Harriet Alexander, Jason R. Graff, Nicole J. Poulton, Luke R. Thompson, Luke R. Thompson, Heather Benway, Emmanuel Boss, Adam Martiny, Adam Martiny
Published 2022-01-01

Subsurface automated samplers for eDNA (SASe) for biological monitoring and research

by Nathan Formel, Ian C. Enochs, Chris Sinigalliano, Sean R. Anderson, Luke R. Thompson
Published 2021-10-01

A Novel Sparse Compositional Technique Reveals Microbial Perturbations

by Cameron Martino, James T. Morton, Clarisse A. Marotz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler
Published 2019-02-01

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts.

by Matthew B Sullivan, Debbie Lindell, Jessica A Lee, Luke R Thompson, Joseph P Bielawski, Sallie W Chisholm
Published 2006-07-01

Lake Erie field trials to advance autonomous monitoring of cyanobacterial harmful algal blooms

by Paul A. Den Uyl, Luke R. Thompson, Luke R. Thompson, Reagan M. Errera, James M. Birch, Christina M. Preston, William Ussler, Colleen E. Yancey, Subba Rao Chaganti, Steven A. Ruberg, Gregory J. Doucette, Gregory J. Dick, Gregory J. Dick, Christopher A. Scholin, Kelly D. Goodwin, Kelly D. Goodwin
Published 2022-10-01

Archived DNA reveals marine heatwave‐associated shifts in fish assemblages

by Zachary Gold, Ryan P. Kelly, Andrew Olaf Shelton, Andrew R. Thompson, Kelly D. Goodwin, Ramón Gallego, Kim M. Parsons, Luke R. Thompson, Dovi Kacev, Paul H. Barber
Published 2024-01-01

Investigation of machine learning algorithms for taxonomic classification of marine metagenomes

by Helen Park, Shen Jean Lim, Jonathan Cosme, Kyle O'Connell, Jilla Sandeep, Felimon Gayanilo, George R. Cutter Jr., Enrique Montes, Chotinan Nitikitpaiboon, Sam Fisher, Hassan Moustahfid, Luke R. Thompson
Published 2023-10-01

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

by Amnon Amir, Daniel McDonald, Jose A. Navas-Molina, Evguenia Kopylova, James T. Morton, Zhenjiang Zech Xu, Eric P. Kightley, Luke R. Thompson, Embriette R. Hyde, Antonio Gonzalez, Rob Knight
Published 2017-04-01

Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, prochlorococcus.

by Erik R Zinser, Debbie Lindell, Zackary I Johnson, Matthias E Futschik, Claudia Steglich, Maureen L Coleman, Matthew A Wright, Trent Rector, Robert Steen, Nathan McNulty, Luke R Thompson, Sallie W Chisholm
Published 2009-01-01

Expanding the temporal and spatial scales of environmental DNA research with autonomous sampling

by Nathan K. Truelove, Nastassia V. Patin, Markus Min, Kathleen J. Pitz, Chris M. Preston, Kevan M. Yamahara, Yanwu Zhang, Ben Y. Raanan, Brian Kieft, Brett Hobson, Luke R. Thompson, Kelly D. Goodwin, Francisco P. Chavez
Published 2022-07-01

Parasite microbiome project: Grand challenges.

by Nolwenn M Dheilly, Joaquín Martínez Martínez, Karyna Rosario, Paul J Brindley, Raina N Fichorova, Jonathan Z Kaye, Kevin D Kohl, Laura J Knoll, Julius Lukeš, Susan L Perkins, Robert Poulin, Lynn Schriml, Luke R Thompson
Published 2019-10-01

Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm

by Jennifer M. Michaud, Luke R. Thompson, Drishti Kaul, Josh L. Espinoza, R. Alexander Richter, Zhenjiang Zech Xu, Christopher Lee, Kevin M. Pham, Charlotte M. Beall, Francesca Malfatti, Farooq Azam, Rob Knight, Michael D. Burkart, Christopher L. Dupont, Kimberly A. Prather
Published 2018-05-01

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

by Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Published 2021-02-01

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

by Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Published 2021-06-01

American Gut: an Open Platform for Citizen Science Microbiome Research

by Daniel McDonald, Embriette Hyde, Justine W. Debelius, James T. Morton, Antonio Gonzalez, Gail Ackermann, Alexander A. Aksenov, Bahar Behsaz, Caitriona Brennan, Yingfeng Chen, Lindsay DeRight Goldasich, Pieter C. Dorrestein, Robert R. Dunn, Ashkaan K. Fahimipour, James Gaffney, Jack A. Gilbert, Grant Gogul, Jessica L. Green, Philip Hugenholtz, Greg Humphrey, Curtis Huttenhower, Matthew A. Jackson, Stefan Janssen, Dilip V. Jeste, Lingjing Jiang, Scott T. Kelley, Dan Knights, Tomasz Kosciolek, Joshua Ladau, Jeff Leach, Clarisse Marotz, Dmitry Meleshko, Alexey V. Melnik, Jessica L. Metcalf, Hosein Mohimani, Emmanuel Montassier, Jose Navas-Molina, Tanya T. Nguyen, Shyamal Peddada, Pavel Pevzner, Katherine S. Pollard, Gholamali Rahnavard, Adam Robbins-Pianka, Naseer Sangwan, Joshua Shorenstein, Larry Smarr, Se Jin Song, Timothy Spector, Austin D. Swafford, Varykina G. Thackray, Luke R. Thompson, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Alison Vrbanac, Paul Wischmeyer, Elaine Wolfe, Qiyun Zhu, Rob Knight
Published 2018-06-01