Regulation of Nitrogen Metabolism by GATA Zinc Finger Transcription Factors in <named-content content-type="genus-species">Yarrowia lipolytica</named-content>

by Kyle R. Pomraning, Erin L. Bredeweg, Scott E. Baker
Published 2017-02-01

Simple and Effective Squash-PCR for Rapid Genotyping of Industrial Microalgae

by Guoliang Yuan, Song Gao, Jeffrey J. Czajka, Ziyu Dai, Kyle R. Pomraning, Rylan D. Duong, Beth A. Hofstad, Shuang Deng
Published 2024-01-01

Rapid and robust squashed spore/colony PCR of industrially important fungi

by Guoliang Yuan, Jeffrey J. Czajka, Ziyu Dai, Dehong Hu, Kyle R. Pomraning, Beth A. Hofstad, Joonhoon Kim, Ana L. Robles, Shuang Deng, Jon K. Magnuson
Published 2023-07-01

Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate

by Kyle R. Pomraning, James R. Collett, Joonhoon Kim, Ellen A. Panisko, David E. Culley, Ziyu Dai, Shuang Deng, Beth A. Hofstad, Mark G. Butcher, Jon K. Magnuson
Published 2019-06-01

Comprehensive Metabolomic, Lipidomic and Microscopic Profiling of Yarrowia lipolytica during Lipid Accumulation Identifies Targets for Increased Lipogenesis.

by Kyle R Pomraning, Siwei Wei, Sue A Karagiosis, Young-Mo Kim, Alice C Dohnalkova, Bruce W Arey, Erin L Bredeweg, Galya Orr, Thomas O Metz, Scott E Baker
Published 2015-01-01

Regulation of Yeast-to-Hyphae Transition in <named-content content-type="genus-species">Yarrowia lipolytica</named-content>

by Kyle R. Pomraning, Erin L. Bredeweg, Eduard J. Kerkhoven, Kerrie Barry, Sajeet Haridas, Hope Hundley, Kurt LaButti, Anna Lipzen, Mi Yan, Jon K. Magnuson, Blake A. Simmons, Igor V. Grigoriev, Jens Nielsen, Scott E. Baker
Published 2018-12-01

Metabolic engineering to improve production of 3-hydroxypropionic acid from corn-stover hydrolysate in Aspergillus species

by Ziyu Dai, Kyle R. Pomraning, Shuang Deng, Joonhoon Kim, Kristen B. Campbell, Ana L. Robles, Beth A. Hofstad, Nathalie Munoz, Yuqian Gao, Teresa Lemmon, Marie S. Swita, Jeremy D. Zucker, Young-Mo Kim, Kristin E. Burnum-Johnson, Jon K. Magnuson
Published 2023-03-01

Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces

by Jeffrey J. Czajka, Jeffrey J. Czajka, Yichao Han, Yichao Han, Joonhoon Kim, Joonhoon Kim, Joonhoon Kim, Stephen J. Mondo, Stephen J. Mondo, Stephen J. Mondo, Beth A. Hofstad, Beth A. Hofstad, AnaLaura Robles, AnaLaura Robles, Sajeet Haridas, Robert Riley, Kurt LaButti, Jasmyn Pangilinan, William Andreopoulos, Anna Lipzen, Juying Yan, Mei Wang, Vivian Ng, Igor V. Grigoriev, Igor V. Grigoriev, Joseph W. Spatafora, Jon K. Magnuson, Jon K. Magnuson, Jon K. Magnuson, Scott E. Baker, Scott E. Baker, Scott E. Baker, Kyle R. Pomraning, Kyle R. Pomraning
Published 2024-04-01

Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus

by Kyle R. Pomraning, Ziyu Dai, Nathalie Munoz, Young-Mo Kim, Yuqian Gao, Shuang Deng, Teresa Lemmon, Marie S. Swita, Jeremy D. Zucker, Joonhoon Kim, Stephen J. Mondo, Ellen Panisko, Meagan C. Burnet, Bobbie-Jo M. Webb-Robertson, Beth Hofstad, Scott E. Baker, Kristin E. Burnum-Johnson, Jon K. Magnuson
Published 2022-12-01

Integration of Proteomics and Metabolomics Into the Design, Build, Test, Learn Cycle to Improve 3-Hydroxypropionic Acid Production in Aspergillus pseudoterreus

by Kyle R. Pomraning, Ziyu Dai, Nathalie Munoz, Young-Mo Kim, Yuqian Gao, Shuang Deng, Joonhoon Kim, Joonhoon Kim, Beth A. Hofstad, Marie S. Swita, Teresa Lemmon, James R. Collett, Ellen A. Panisko, Bobbie-Jo M. Webb-Robertson, Jeremy D. Zucker, Carrie D. Nicora, Henrique De Paoli, Scott E. Baker, Kristin E. Burnum-Johnson, Nathan J. Hillson, Jon K. Magnuson, Jon K. Magnuson
Published 2021-04-01

PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements

by Aivett Bilbao, Nathalie Munoz, Joonhoon Kim, Daniel J. Orton, Yuqian Gao, Kunal Poorey, Kyle R. Pomraning, Karl Weitz, Meagan Burnet, Carrie D. Nicora, Rosemarie Wilton, Shuang Deng, Ziyu Dai, Ethan Oksen, Aaron Gee, Rick A. Fasani, Anya Tsalenko, Deepti Tanjore, James Gardner, Richard D. Smith, Joshua K. Michener, John M. Gladden, Erin S. Baker, Christopher J. Petzold, Young-Mo Kim, Alex Apffel, Jon K. Magnuson, Kristin E. Burnum-Johnson
Published 2023-04-01