Two iPSC lines generated from the bone marrow of a relapsed/refractory AML patient display normal karyotypes and myeloid differentiation potential

by Amanda E. Yamasaki, Nicholas E. King, Hiroko Matsui, Kristen Jepsen, Athanasia D. Panopoulos
Published 2019-12-01

An iPSC line derived from a human acute myeloid leukemia cell line (HL-60-iPSC) retains leukemic abnormalities and displays myeloid differentiation defects

by Amanda E. Yamasaki, Jane N. Warshaw, Beverly L. Kyalwazi, Hiroko Matsui, Kristen Jepsen, Athanasia D. Panopoulos
Published 2020-12-01

p53 interaction with JMJD3 results in its nuclear distribution during mouse neural stem cell differentiation.

by Susana Solá, Joana M Xavier, Daniela M Santos, Márcia M Aranha, Ana L Morgado, Kristen Jepsen, Cecília M P Rodrigues
Published 2011-03-01

The ViReflow pipeline enables user friendly large scale viral consensus genome reconstruction

by Niema Moshiri, Kathleen M. Fisch, Amanda Birmingham, Peter DeHoff, Gene W. Yeo, Kristen Jepsen, Louise C. Laurent, Rob Knight
Published 2022-03-01

IRE1α regulates macrophage polarization, PD-L1 expression, and tumor survival.

by Alyssa Batista, Jeffrey J Rodvold, Su Xian, Stephen C Searles, Alyssa Lew, Takao Iwawaki, Gonzalo Almanza, T Cameron Waller, Jonathan Lin, Kristen Jepsen, Hannah Carter, Maurizio Zanetti
Published 2020-06-01

DNA methylation changes associated with Parkinson’s disease progression: outcomes from the first longitudinal genome-wide methylation analysis in blood

by Adrienne Henderson-Smith, Kathleen M. Fisch, Jianping Hua, Ganqiang Liu, Eugenia Ricciardelli, Kristen Jepsen, Mathew Huentelman, Gabriel Stalberg, Steven D. Edland, Clemens R. Scherzer, Travis Dunckley, Paula Desplats
Published 2019-04-01

Over-expression of DSCAM and COL6A2 cooperatively generates congenital heart defects.

by Tamar R Grossman, Amir Gamliel, Robert J Wessells, Ouarda Taghli-Lamallem, Kristen Jepsen, Karen Ocorr, Julie R Korenberg, Kirk L Peterson, Michael G Rosenfeld, Rolf Bodmer, Ethan Bier
Published 2011-11-01

Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers.

by Christopher DeBoever, Emanuela M Ghia, Peter J Shepard, Laura Rassenti, Christian L Barrett, Kristen Jepsen, Catriona H M Jamieson, Dennis Carson, Thomas J Kipps, Kelly A Frazer
Published 2015-03-01

Mutational profiling of micro-dissected pre-malignant lesions from archived specimens

by Daniela Nachmanson, Joseph Steward, Huazhen Yao, Adam Officer, Eliza Jeong, Thomas J. O’Keefe, Farnaz Hasteh, Kristen Jepsen, Gillian L. Hirst, Laura J. Esserman, Alexander D. Borowsky, Olivier Harismendy
Published 2020-11-01

Differential blood DNA methylation across Lewy body dementias

by Chanond A. Nasamran, Anubhav Nikunj Singh Sachan, Jennifer Mott, Yuliya I. Kuras, Clemens R. Scherzer, Harvard Biomarkers Study, Eugenia Ricciardelli, Kristen Jepsen, Steven D. Edland, Kathleen M. Fisch, Paula Desplats
Published 2021-01-01

TCF1 and LEF1 Control Treg Competitive Survival and Tfr Development to Prevent Autoimmune Diseases

by Bi-Huei Yang, Ke Wang, Shuo Wan, Yan Liang, Xiaomei Yuan, Yi Dong, Sunglim Cho, Wanqing Xu, Kristen Jepsen, Gen-Sheng Feng, Li-Fan Lu, Hai-Hui Xue, Wenxian Fu
Published 2019-06-01

Neural Stem Cell Differentiation Is Dictated by Distinct Actions of Nuclear Receptor Corepressors and Histone Deacetylases

by Gonçalo Castelo-Branco, Tobias Lilja, Karolina Wallenborg, Ana M. Falcão, Sueli C. Marques, Aileen Gracias, Derek Solum, Ricardo Paap, Julian Walfridsson, Ana I. Teixeira, Michael G. Rosenfeld, Kristen Jepsen, Ola Hermanson
Published 2014-09-01

The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ

by Daniela Nachmanson, Adam Officer, Hidetoshi Mori, Jonathan Gordon, Mark F. Evans, Joseph Steward, Huazhen Yao, Thomas O’Keefe, Farnaz Hasteh, Gary S. Stein, Kristen Jepsen, Donald L. Weaver, Gillian L. Hirst, Brian L. Sprague, Laura J. Esserman, Alexander D. Borowsky, Janet L. Stein, Olivier Harismendy
Published 2022-01-01

The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

by Hélène Badouin, Amandine Velt, François Gindraud, Timothée Flutre, Vincent Dumas, Sonia Vautrin, William Marande, Jonathan Corbi, Erika Sallet, Jérémy Ganofsky, Sylvain Santoni, Dominique Guyot, Eugenia Ricciardelli, Kristen Jepsen, Jos Käfer, Hélène Berges, Eric Duchêne, Franck Picard, Philippe Hugueney, Raquel Tavares, Roberto Bacilieri, Camille Rustenholz, Gabriel A. B. Marais
Published 2020-09-01

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction

by Zachary T. Herbert, Jamie P. Kershner, Vincent L. Butty, Jyothi Thimmapuram, Sulbha Choudhari, Yuriy O. Alekseyev, Jun Fan, Jessica W. Podnar, Edward Wilcox, Jenny Gipson, Allison Gillaspy, Kristen Jepsen, Sandra Splinter BonDurant, Krystalynne Morris, Maura Berkeley, Ashley LeClerc, Stephen D. Simpson, Gary Sommerville, Leslie Grimmett, Marie Adams, Stuart S. Levine
Published 2018-03-01

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads

by Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marlon Liyanage, Jason W. Dang, Vanessa V. Phelan, Robert A. Quinn, Anton Bankevich, John T. Chang, Tariq M. Rana, Douglas J. Conrad, William J. Sandborn, Larry Smarr, Pieter C. Dorrestein, Pavel A. Pevzner, Rob Knight
Published 2019-10-01

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types

by Athanasia D. Panopoulos, Matteo D'Antonio, Paola Benaglio, Roy Williams, Sherin I. Hashem, Bernhard M. Schuldt, Christopher DeBoever, Angelo D. Arias, Melvin Garcia, Bradley C. Nelson, Olivier Harismendy, David A. Jakubosky, Margaret K.R. Donovan, William W. Greenwald, KathyJean Farnam, Megan Cook, Victor Borja, Carl A. Miller, Jonathan D. Grinstein, Frauke Drees, Jonathan Okubo, Kenneth E. Diffenderfer, Yuriko Hishida, Veronica Modesto, Carl T. Dargitz, Rachel Feiring, Chang Zhao, Aitor Aguirre, Thomas J. McGarry, Hiroko Matsui, He Li, Joaquin Reyna, Fangwen Rao, Daniel T. O'Connor, Gene W. Yeo, Sylvia M. Evans, Neil C. Chi, Kristen Jepsen, Naoki Nariai, Franz-Josef Müller, Lawrence S.B. Goldstein, Juan Carlos Izpisua Belmonte, Eric Adler, Jeanne F. Loring, W. Travis Berggren, Agnieszka D'Antonio-Chronowska, Erin N. Smith, Kelly A. Frazer
Published 2017-04-01

Multi-Site Observational Study to Assess Biomarkers for Susceptibility or Resilience to Chronic Pain: The Acute to Chronic Pain Signatures (A2CPS) Study Protocol

by Giovanni Berardi, Laura Frey-Law, Kathleen A. Sluka, Emine O. Bayman, Christopher S. Coffey, Dixie Ecklund, Carol G. T. Vance, Dana L. Dailey, John Burns, Asokumar Buvanendran, Robert J. McCarthy, Joshua Jacobs, Xiaohong Joe Zhou, Richard Wixson, Tessa Balach, Chad M. Brummett, Daniel Clauw, Daniel Clauw, Daniel Clauw, Douglas Colquhoun, Steven E. Harte, Steven E. Harte, Richard E. Harris, Richard E. Harris, David A. Williams, David A. Williams, David A. Williams, David A. Williams, Andrew C. Chang, Jennifer Waljee, Kathleen M. Fisch, Kristen Jepsen, Louise C. Laurent, Michael Olivier, Carl D. Langefeld, Timothy D. Howard, Oliver Fiehn, Jon M. Jacobs, Panshak Dakup, Wei-Jun Qian, Adam C. Swensen, Anna Lokshin, Martin Lindquist, Brian S. Caffo, Ciprian Crainiceanu, Scott Zeger, Ari Kahn, Tor Wager, Margaret Taub, James Ford, Stephani P. Sutherland, Laura D. Wandner
Published 2022-04-01

Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schoolsResearch in context

by Rebecca Fielding-Miller, Smruthi Karthikeyan, Tommi Gaines, Richard S. Garfein, Rodolfo A. Salido, Victor J. Cantu, Laura Kohn, Natasha K. Martin, Adriane Wynn, Carrissa Wijaya, Marlene Flores, Vinton Omaleki, Araz Majnoonian, Patricia Gonzalez-Zuniga, Megan Nguyen, Anh V. Vo, Tina Le, Dawn Duong, Ashkan Hassani, Samantha Tweeten, Kristen Jepsen, Benjamin Henson, Abbas Hakim, Amanda Birmingham, Peter De Hoff, Adam M. Mark, Chanond A. Nasamran, Sara Brin Rosenthal, Niema Moshiri, Kathleen M. Fisch, Greg Humphrey, Sawyer Farmer, Helena M. Tubb, Tommy Valles, Justin Morris, Jaeyoung Kang, Behnam Khaleghi, Colin Young, Ameen D. Akel, Sean Eilert, Justin Eno, Ken Curewitz, Louise C. Laurent, Tajana Rosing, Rob Knight, Nathan A. Baer, Tom Barber, Anelizze Castro-Martinez, Marisol Chacón, Willi Cheung, Evelyn S. Crescini, Emily R. Eisner, Lizbeth Franco Vargas, Abbas Hakim, Charlotte Hobbs, Alma L. Lastrella, Elijah S. Lawrence, Nathaniel L. Matteson, Karthik Gangavarapu, Toan T. Ngo, Phoebe Seaver, Elizabeth W. Smoot, Rebecca Tsai, Bing Xia, Stefan Aigner, Catelyn Anderson, Pedro Belda-Ferre, Shashank Sathe, Mark Zeller, Kristian G. Andersen, Gene W. Yeo, Ezra Kurzban
Published 2023-03-01

Implementation of California COVIDNet – a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance

by Debra A. Wadford, Nikki Baumrind, Elizabeth F. Baylis, John M. Bell, Ellen L. Bouchard, Megan Crumpler, Eric M. Foote, Sabrina Gilliam, Carol A. Glaser, Jill K. Hacker, Katya Ledin, Sharon L. Messenger, Christina Morales, Emily A. Smith, Joel R. Sevinsky, Russell B. Corbett-Detig, Joseph DeRisi, Joseph DeRisi, Kathleen Jacobson, the COVIDNet Consortium, Summer Adams, Phacharee Arunleung, Matthew Bacinskas, Nikki Baumrind, Elizabeth F. Baylis, Cynthia Bernas, John M. Bell, Ricardo Berumen, Ellen L. Bouchard, Brandon Brown, Teal Bullick, Lyndsey Chaille, Alice Chen, Giorgio Cosentino, Yocelyn Cruz, Nick D’Angelo, Mojgan Deldari, Alex Espinosa, Ambar Espinoza, Eric M. Foote, Shiffen Getabecha, Sabrina Gilliam, Carol A. Glaser, Madeleine Glenn, Bianca Gonzaga, Ydelita Gonzales, Melanie Greengard, Hugo Guevara, Jill K. Hacker, Kim Hansard, April Hatada, Monica Haw, Thalia Huynh, Kathleen Jacobson, Chantha Kath, Paul B. Kimsey, Katya Ledin, Deidra Lemoine, Ruth Lopez, Sharon L. Messenger, Blanca Molinar, Christina Morales, Samantha Munoz, Robert Nakamura, Nichole Osugi, Tasha Padilla, Chao-Yang Pan, Mayuri V. Panditrao, Chris Preas, Will Probert, Alexa Quintana, Maria Uribe-Fuentes, Mayra Ramirez, Clarence Reyes, Estela Saguar, Maria Salas, Ioana Seritan, Brandon Stavig, Hilary Tamnanchit, Serena Ting, Debra A. Wadford, Cindy Wong, Chelsea Wright, Shigeo Yagi, Venice Servellita, Alicia Sotomayor-Gonzalez, Charles Y. Chiu, Isabel Bjork, Joshua Kapp, Anouk van den Bout, Ellen Kephart, Mawadda Alnaeeli, Hau-Ling Poon, Scott Topper, Marzieh Shafii, Sara Sowko, Stephanie Trammell, Erik Wolfsohn, Patrick Ayscue, Amy Kistler, Emily Crawford, Joseph DeRisi, Cristina Tato, Valeria Arboledaz, Eleazar Eskin, Laila M. Sathe, Jacek Skarbinski, Abigail Duque, Jeffrey Schapiro, Ivy Yeung, Rama Ghatti, Zahra Shajani-Yi, Jacob M. Garrigues, Nicole Green, Peera Hemarajata, Carlos Anaya, Donna Ferguson, Beatrix Kapuszinsky, Favian Ramirez, Felipe Sta Agueda, Megan Crumpler, Julia Wolfe, Russell B. Corbett-Detig, David Haussler, Marc Perry, Jakob McBroome, Nhi Duong, Deborah Forester, Anthony Gonzalez, Maria J. Victorio, Anna Liza M. Manlutac, Jeremy Corrigan, Nicholas S. Rhoades, Lina Castro, Godfred Masinde, Harmeet Kaur, Monica Paniagua-Alexander, Katrina G. Erwin, Glen Miller, Frances N. Sidhu, Morris Jones, Sangita Kothari, Christopher Ngo, Brandon Bonin, Daniel Castillo, Rensen Khoshabian, Kristian Andersen, Mark Zeller, Lisa Critchett, Carlos Gonzalez, Iryna V. Goraichuk, Rachel Rees, Frank Ambrosio, Curtis J. Kapsak, Kevin G. Libuit, Michelle R. Scribner, Joel R. Sevinsky, Emily A. Smith, Sage M. Wright, Vanessa B. Cadiz, Denise Lopez, Matthew Rosman, Bryan Bach, Stacia Wyman, Charlotte Acharya, Ryan Davis, Richard Michelmore, Melanie Oakes, Suzanne Sandmeyer, Kathy Borkovich, Clay H. Clark, Holly Clark, Brandon Le, Peter De Hoff, Kristen Jepsen, Rob Knight, Louise C. Laurent, Zack Aralis, Carolina Arias, Varuzhan Balasanyan, Mark Duhon, Xinmin Li, Eric Chow, Nicole Leung, Delsy Martinez, Tyler T. Miyasaki, Ashlee Clow, Jared Hoffman, Thomas Rush
Published 2023-10-01