A hierarchical spike-and-slab model for pan-cancer survival using pan-omic data

by Sarah Samorodnitsky, Katherine A. Hoadley, Eric F. Lock
Published 2022-06-01

A Pan-Cancer and Polygenic Bayesian Hierarchical Model for the Effect of Somatic Mutations on Survival

by Sarah Samorodnitsky, Katherine A Hoadley, Eric F Lock
Published 2020-02-01

Potential tumor suppressor role for the c-Myb oncogene in luminal breast cancer.

by Aaron R Thorner, Joel S Parker, Katherine A Hoadley, Charles M Perou
Published 2010-10-01

Genetic determinants of the molecular portraits of epithelial cancers

by Youli Xia, Cheng Fan, Katherine A. Hoadley, Joel S. Parker, Charles M. Perou
Published 2019-12-01

Harmonizing heterogeneous transcriptomics datasets for machine learning-based analysis to identify spaceflown murine liver-specific changes

by Hari Ilangovan, Prachi Kothiyal, Katherine A. Hoadley, Robin Elgart, Greg Eley, Parastou Eslami
Published 2024-06-01

A multi-omics longitudinal study of the murine retinal response to chronic low-dose irradiation and simulated microgravity

by Prachi Kothiyal, Greg Eley, Hari Ilangovan, Katherine A. Hoadley, S. Robin Elgart, Xiao W. Mao, Parastou Eslami
Published 2022-10-01

FOXM1 Deubiquitination by USP21 Regulates Cell Cycle Progression and Paclitaxel Sensitivity in Basal-like Breast Cancer

by Anthony Arceci, Thomas Bonacci, Xianxi Wang, Kyle Stewart, Jeffrey S. Damrauer, Katherine A. Hoadley, Michael J. Emanuele
Published 2019-03-01

Genomic characterization of rare molecular subclasses of hepatocellular carcinoma

by Jeffrey S. Damrauer, Markia A. Smith, Vonn Walter, Aatish Thennavan, Lisle E. Mose, Sara R. Selitsky, Katherine A. Hoadley
Published 2021-10-01

Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study

by Yifeng Shi, Linnea T. Olsson, Katherine A. Hoadley, Benjamin C. Calhoun, J. S. Marron, Joseph Geradts, Marc Niethammer, Melissa A. Troester
Published 2023-11-01

Virus expression detection reveals RNA-sequencing contamination in TCGA

by Sara R. Selitsky, David Marron, Daniel Hollern, Lisle E. Mose, Katherine A. Hoadley, Corbin Jones, Joel S. Parker, Dirk P. Dittmer, Charles M. Perou
Published 2020-01-01

SCISSOR: a framework for identifying structural changes in RNA transcripts

by Hyo Young Choi, Heejoon Jo, Xiaobei Zhao, Katherine A. Hoadley, Scott Newman, Jeremiah Holt, Michele C. Hayward, Michael I. Love, J. S. Marron, D. Neil Hayes
Published 2021-01-01

Prognostic value of B cells in cutaneous melanoma

by Sara R. Selitsky, Lisle E. Mose, Christof C. Smith, Shengjie Chai, Katherine A. Hoadley, Dirk P. Dittmer, Stergios J. Moschos, Joel S. Parker, Benjamin G. Vincent
Published 2019-05-01

Oncometabolite D-2-Hydroxyglutarate Inhibits ALKBH DNA Repair Enzymes and Sensitizes IDH Mutant Cells to Alkylating Agents

by Pu Wang, Jing Wu, Shenghong Ma, Lei Zhang, Jun Yao, Katherine A. Hoadley, Matthew D. Wilkerson, Charles M. Perou, Kun-Liang Guan, Dan Ye, Yue Xiong
Published 2015-12-01

DNA Damage Repair Classifier Defines Distinct Groups in Hepatocellular Carcinoma

by Markia A. Smith, Sarah C. Van Alsten, Andrea Walens, Jeffrey S. Damrauer, Ugwuji N. Maduekwe, Russell R. Broaddus, Michael I. Love, Melissa A. Troester, Katherine A. Hoadley
Published 2022-09-01

Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells

by Jacquelyn J. Bower, Leah D. Vance, Matthew Psioda, Stephanie L. Smith-Roe, Dennis A. Simpson, Joseph G. Ibrahim, Katherine A. Hoadley, Charles M. Perou, William K. Kaufmann
Published 2017-03-01

Prognostic significance of RNA-based TP53 pathway function among estrogen receptor positive and negative breast cancer cases

by Amber N. Hurson, Mustapha Abubakar, Alina M. Hamilton, Kathleen Conway, Katherine A. Hoadley, Michael I. Love, Andrew F. Olshan, Charles M. Perou, Montserrat Garcia-Closas, Melissa A. Troester
Published 2022-06-01

Androgen Receptor mRNA Expression in Urothelial Carcinoma of the Bladder: A Retrospective Analysis of Two Independent Cohorts

by Danijel Sikic, Ralph M. Wirtz, Sven Wach, Lars Dyrskjøt, Philipp Erben, Christian Bolenz, Johannes Breyer, Wolfgang Otto, Katherine A. Hoadley, Seth P. Lerner, Markus Eckstein, Arndt Hartmann, Bastian Keck
Published 2019-04-01

Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer

by A. Gordon Robertson, Christina Yau, Jian Carrot-Zhang, Jeffrey S. Damrauer, Theo A. Knijnenburg, Nyasha Chambwe, Katherine A. Hoadley, Anab Kemal, Jean C. Zenklusen, Andrew D. Cherniack, Rameen Beroukhim, Wanding Zhou
Published 2021-06-01

Molecular analysis of TCGA breast cancer histologic types

by Aatish Thennavan, Francisco Beca, Youli Xia, Susana Garcia-Recio, Kimberly Allison, Laura C. Collins, Gary M. Tse, Yunn-Yi Chen, Stuart J. Schnitt, Katherine A. Hoadley, Andrew Beck, Charles M. Perou
Published 2021-12-01

Spatial Characterization of Tumor-Infiltrating Lymphocytes and Breast Cancer Progression

by Danielle J. Fassler, Luke A. Torre-Healy, Rajarsi Gupta, Alina M. Hamilton, Soma Kobayashi, Sarah C. Van Alsten, Yuwei Zhang, Tahsin Kurc, Richard A. Moffitt, Melissa A. Troester, Katherine A. Hoadley, Joel Saltz
Published 2022-04-01