Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin

by Kairi Raime, Kaarel Krjutškov, Maido Remm
Published 2020-05-01

Guide for library design and bias correction for large-scale transcriptome studies using highly multiplexed RNAseq methods

by Shintaro Katayama, Tiina Skoog, Cilla Söderhäll, Elisabet Einarsdottir, Kaarel Krjutškov, Juha Kere
Published 2019-08-01

Computational framework for targeted high-coverage sequencing based NIPT.

by Hindrek Teder, Priit Paluoja, Kadri Rekker, Andres Salumets, Kaarel Krjutškov, Priit Palta
Published 2019-01-01

A preliminary transcriptome analysis suggests a transitory effect of vitamin D on mitochondrial function in obese young Finnish subjects

by Elisabet Einarsdottir, Minna Pekkinen, Kaarel Krjutškov, Shintaro Katayama, Juha Kere, Outi Mäkitie, Heli Viljakainen
Published 2019-05-01

Generation of RNA sequencing libraries for transcriptome analysis of globin-rich tissues of the domestic dog

by Sini Ezer, Masahito Yoshihara, Shintaro Katayama, Carsten Daub, Hannes Lohi, Kaarel Krjutskov, Juha Kere
Published 2021-12-01

Systematic evaluation of NIPT aneuploidy detection software tools with clinically validated NIPT samples.

by Priit Paluoja, Hindrek Teder, Amin Ardeshirdavani, Baran Bayindir, Joris Vermeesch, Andres Salumets, Kaarel Krjutškov, Priit Palta
Published 2021-12-01

Gene-Expression Profiling Suggests Impaired Signaling via the Interferon Pathway in Cstb-/- Microglia.

by Inken Körber, Shintaro Katayama, Elisabet Einarsdottir, Kaarel Krjutškov, Paula Hakala, Juha Kere, Anna-Elina Lehesjoki, Tarja Joensuu
Published 2016-01-01

Human pluripotent reprogramming with CRISPR activators

by Jere Weltner, Diego Balboa, Shintaro Katayama, Maxim Bespalov, Kaarel Krjutškov, Eeva-Mari Jouhilahti, Ras Trokovic, Juha Kere, Timo Otonkoski
Published 2018-07-01

Optimized single-cell RNA sequencing protocol to study early genome activation in mammalian preimplantation development

by Nina Boskovic, Gamze Yazgeldi, Sini Ezer, Mari H. Tervaniemi, Jose Inzunza, Spyridon Panagiotis Deligiannis, Barış Yaşar, Tiina Skoog, Kaarel Krjutškov, Shintaro Katayama, Juha Kere
Published 2023-09-01

Ketogenic diet attenuates hepatopathy in mouse model of respiratory chain complex III deficiency caused by a Bcs1l mutation

by Janne Purhonen, Jayasimman Rajendran, Matthias Mörgelin, Kristiina Uusi-Rauva, Shintaro Katayama, Kaarel Krjutskov, Elisabet Einarsdottir, Vidya Velagapudi, Juha Kere, Matti Jauhiainen, Vineta Fellman, Jukka Kallijärvi
Published 2017-04-01

Nasal upregulation of CST1 in dog-sensitised children with severe allergic airway disease

by Ulrika Käck, Elisabet Einarsdottir, Marianne van Hage, Anna Asarnoj, Anna James, Anna Nopp, Kaarel Krjutškov, Shintaro Katayama, Juha Kere, Gunnar Lilja, Cilla Söderhäll, Jon R. Konradsen
Published 2021-04-01

Decidualized endometrial stromal cells present with altered androgen response in PCOS

by Masuma Khatun, Alvin Meltsov, Darja Lavogina, Marina Loid, Keiu Kask, Riikka K. Arffman, Henna-Riikka Rossi, Freddy Lättekivi, Kersti Jääger, Kaarel Krjutškov, Ago Rinken, Andres Salumets, Terhi T. Piltonen
Published 2021-08-01

Prenatal diagnosis of a 46,XY karyotype female fetus with an SRY-associated gonadal dysgenesis, conceived through an intracytoplasmic sperm injection: a case report

by Lidiia Zhytnik, Maire Peters, Kadi Tilk, Tiia Reimand, Piret Ilisson, Tiina Kahre, Ülle Murumets, Aivar Ehrenberg, Eva-Liina Ustav, Neeme Tõnisson, Signe Mölder, Hindrek Teder, Kaarel Krjutškov, Andres Salumets
Published 2022-02-01

Targeted gene expression profiling for accurate endometrial receptivity testing

by Alvin Meltsov, Merli Saare, Hindrek Teder, Priit Paluoja, Riikka K. Arffman, Terhi Piltonen, Piotr Laudanski, Mirosław Wielgoś, Luca Gianaroli, Mariann Koel, Maire Peters, Andres Salumets, Kaarel Krjutškov, Priit Palta
Published 2023-08-01

Profiling of Extracellular Small RNAs Highlights a Strong Bias towards Non-Vesicular Secretion

by Helena Sork, Mariana Conceicao, Giulia Corso, Joel Nordin, Yi Xin Fiona Lee, Kaarel Krjutskov, Jakub Orzechowski Westholm, Pieter Vader, Marie Pauwels, Roosmarijn E. Vandenbroucke, Matthew JA Wood, Samir EL Andaloussi, Imre Mäger
Published 2021-06-01

Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD

by Anna M.L. Coenen-Stass, Helena Sork, Sole Gatto, Caroline Godfrey, Amarjit Bhomra, Kaarel Krjutškov, Jonathan R. Hart, Jakub O. Westholm, Liz O’Donovan, Andreas Roos, Hanns Lochmüller, Pier Lorenzo Puri, Samir EL Andaloussi, Matthew J.A. Wood, Thomas C. Roberts
Published 2018-12-01

Impact of polyols on Oral microbiome of Estonian schoolchildren

by Jelena Štšepetova, Jaak Truu, Riina Runnel, Rita Nõmmela, Mare Saag, Jana Olak, Hiie Nõlvak, Jens-Konrad Preem, Kristjan Oopkaup, Kaarel Krjutškov, Eino Honkala, Sisko Honkala, Kauko Mäkinen, Pirkko-Liisa Mäkinen, Tero Vahlberg, Joan Vermeiren, Douwina Bosscher, Peter de Cock, Reet Mändar
Published 2019-04-01

DUX4 is a multifunctional factor priming human embryonic genome activation

by Sanna Vuoristo, Shruti Bhagat, Christel Hydén-Granskog, Masahito Yoshihara, Lisa Gawriyski, Eeva-Mari Jouhilahti, Vipin Ranga, Mahlet Tamirat, Mikko Huhtala, Ida Kirjanov, Sonja Nykänen, Kaarel Krjutškov, Anastassius Damdimopoulos, Jere Weltner, Kosuke Hashimoto, Gaëlle Recher, Sini Ezer, Priit Paluoja, Pauliina Paloviita, Yujiro Takegami, Ai Kanemaru, Karolina Lundin, Tomi T. Airenne, Timo Otonkoski, Juha S. Tapanainen, Hideya Kawaji, Yasuhiro Murakawa, Thomas R. Bürglin, Markku Varjosalo, Mark S. Johnson, Timo Tuuri, Shintaro Katayama, Juha Kere
Published 2022-04-01