HT-ARGfinder: A Comprehensive Pipeline for Identifying Horizontally Transferred Antibiotic Resistance Genes and Directionality in Metagenomic Sequencing Data

by Badhan Das, Muhit Islam Emon, Nazifa Ahmed Moumi, Justin Sein, Amy Pruden, Lenwood S. Heath, Liqing Zhang
Published 2022-06-01

Estimating the Allele-Specific Expression of SNVs From 10× Genomics Single-Cell RNA-Sequencing Data

by Prashant N. M., Hongyu Liu, Pavlos Bousounis, Liam Spurr, Nawaf Alomran, Helen Ibeawuchi, Justin Sein, Dacian Reece-Stremtan, Anelia Horvath
Published 2020-02-01

scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

by Hongyu Liu, N. M. Prashant, Liam F. Spurr, Pavlos Bousounis, Nawaf Alomran, Helen Ibeawuchi, Justin Sein, Piotr Słowiński, Krasimira Tsaneva-Atanasova, Anelia Horvath
Published 2021-01-01