Assessment of Gene Set Enrichment Analysis using curated RNA-seq-based benchmarks.

by Julián Candia, Luigi Ferrucci
Published 2024-01-01

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models

by Julián Candia, John S Tsang
Published 2019-04-01

Assessment of variability in the plasma 7k SomaScan proteomics assay

by Julián Candia, Gulzar N. Daya, Toshiko Tanaka, Luigi Ferrucci, Keenan A. Walker
Published 2022-10-01

Plasma amino acid signature for sarcopenic phenotypes in community-dwelling octogenarians: Results from the Kawasaki Aging Wellbeing Project

by Yusuke Osawa, Julián Candia, Yukiko Abe, Takayuki Tajima, Yuko Oguma, Yasumichi Arai
Published 2023-07-01

RefCell: multi-dimensional analysis of image-based high-throughput screens based on ‘typical cells’

by Yang Shen, Nard Kubben, Julián Candia, Alexandre V. Morozov, Tom Misteli, Wolfgang Losert
Published 2018-11-01

Proteomic Mediators of Overall Cardiovascular Health on All-Cause Mortality

by Toshiko Tanaka, Sameera A. Talegawkar, Yichen Jin, Julián Candia, Giovanna Fantoni, Stefania Bandinelli, Luigi Ferrucci
Published 2023-02-01

A Plasma Proteomic Signature of Skeletal Muscle Mitochondrial Function

by Marta Zampino, Toshiko Tanaka, Ceereena Ubaida-Mohien, Giovanna Fantoni, Julián Candia, Richard D. Semba, Luigi Ferrucci
Published 2020-12-01

Web Tool for Navigating and Plotting SomaLogic ADAT Files

by Foo Cheung, Giovanna Fantoni, Maria Conner, Brian A. Sellers, Yuri Kotliarov, Julián Candia, Katherine Stagliano, Angélique Biancotto
Published 2017-09-01

Metabolomic Profile of Different Dietary Patterns and Their Association with Frailty Index in Community-Dwelling Older Men and Women

by Toshiko Tanaka, Sameera A. Talegawkar, Yichen Jin, Julián Candia, Qu Tian, Ruin Moaddel, Eleanor M. Simonsick, Luigi Ferrucci
Published 2022-05-01

Plasma proteomic biomarker signature of age predicts health and life span

by Toshiko Tanaka, Nathan Basisty, Giovanna Fantoni, Julián Candia, Ann Z Moore, Angelique Biancotto, Birgit Schilling, Stefania Bandinelli, Luigi Ferrucci
Published 2020-11-01

Proteins in the pathway from high red blood cell width distribution to all-cause mortality

by Yusuke Osawa, Toshiko Tanaka, Richard D. Semba, Giovanna Fantoni, Ruin Moaddel, Julián Candia, Eleanor M. Simonsick, Stefania Bandinelli, Luigi Ferrucci
Published 2022-02-01

The genomic landscape of Mongolian hepatocellular carcinoma

by Julián Candia, Enkhjargal Bayarsaikhan, Mayank Tandon, Anuradha Budhu, Marshonna Forgues, Lkhagva-Ochir Tovuu, Undarmaa Tudev, Justin Lack, Ann Chao, Jigjidsuren Chinburen, Xin Wei Wang
Published 2020-09-01

Plasma proteomic signatures predict dementia and cognitive impairment

by Toshiko Tanaka, Robert Lavery, Vijay Varma, Giovanna Fantoni, Marco Colpo, Madhav Thambisetty, Julian Candia, Susan M. Resnick, David A. Bennett, Angelique Biancotto, Stefania Bandinelli, Luigi Ferrucci
Published 2020-01-01

From cellular characteristics to disease diagnosis: uncovering phenotypes with supercells.

by Julián Candia, Ryan Maunu, Meghan Driscoll, Angélique Biancotto, Pradeep Dagur, J Philip McCoy, H Nida Sen, Lai Wei, Amos Maritan, Kan Cao, Robert B Nussenblatt, Jayanth R Banavar, Wolfgang Losert
Published 2013-01-01

Upregulation of Sarcolemmal Hemichannels and Inflammatory Transcripts with Neuromuscular Junction Instability during Lower Limb Unloading in Humans

by Giuseppe Sirago, Julián Candia, Martino V. Franchi, Fabio Sarto, Elena Monti, Luana Toniolo, Carlo Reggiani, Emiliana Giacomello, Sandra Zampieri, Lisa M. Hartnell, Giuseppe De Vito, Marco Sandri, Luigi Ferrucci, Marco V. Narici
Published 2023-03-01

Sex and prior exposure jointly shape innate immune responses to a live herpesvirus vaccine

by Foo Cheung, Richard Apps, Lesia Dropulic, Yuri Kotliarov, Jinguo Chen, Tristan Jordan, Marc Langweiler, Julian Candia, Angelique Biancotto, Kyu Lee Han, Nicholas Rachmaninoff, Harlan Pietz, Kening Wang, John S Tsang, Jeffrey I Cohen
Published 2023-01-01

Identification and Validation of Nutrient State-Dependent Serum Protein Mediators of Human CD4⁺ T Cell Responsiveness

by Kim Han, Komudi Singh, Matthew J. Rodman, Shahin Hassanzadeh, Yvonne Baumer, Rebecca D. Huffstutler, Jinguo Chen, Julián Candia, Foo Cheung, Katherine E. R. Stagliano, Mehdi Pirooznia, Tiffany M. Powell-Wiley, Michael N. Sack
Published 2021-04-01

Characterization of tumor evolution by functional clonality and phylogenetics in hepatocellular carcinoma

by Zeynep Kacar, Eric Slud, Doron Levy, Julián Candia, Anuradha Budhu, Marshonna Forgues, Xiaolin Wu, Arati Raziuddin, Bao Tran, Jyoti Shetty, Yotsawat Pomyen, Jittiporn Chaisaingmongkol, Siritida Rabibhadana, Benjarath Pupacdi, Vajarabhongsa Bhudhisawasdi, Nirush Lertprasertsuke, Chirayu Auewarakul, Suleeporn Sangrajrang, Chulabhorn Mahidol, Mathuros Ruchirawat, Xin Wei Wang
Published 2024-03-01

Epigenetic signature of human immune aging in the GESTALT study

by Roshni Roy, Pei-Lun Kuo, Julián Candia, Dimitra Sarantopoulou, Ceereena Ubaida-Mohien, Dena Hernandez, Mary Kaileh, Sampath Arepalli, Amit Singh, Arsun Bektas, Jaekwan Kim, Ann Z Moore, Toshiko Tanaka, Julia McKelvey, Linda Zukley, Cuong Nguyen, Tonya Wallace, Christopher Dunn, William Wood, Yulan Piao, Christopher Coletta, Supriyo De, Jyoti Sen, Nan-ping Weng, Ranjan Sen, Luigi Ferrucci
Published 2023-08-01

Serum proteomics links suppression of tumor immunity to ancestry and lethal prostate cancer

by Tsion Zewdu Minas, Julián Candia, Tiffany H. Dorsey, Francine Baker, Wei Tang, Maeve Kiely, Cheryl J. Smith, Amy L. Zhang, Symone V. Jordan, Obadi M. Obadi, Anuoluwapo Ajao, Yao Tettey, Richard B. Biritwum, Andrew A. Adjei, James E. Mensah, Robert N. Hoover, Frank J. Jenkins, Rick Kittles, Ann W. Hsing, Xin W. Wang, Christopher A. Loffredo, Clayton Yates, Michael B. Cook, Stefan Ambs
Published 2022-04-01