Bacterial adaptation through distributed sensing of metabolic fluxes

by Oliver Kotte, Judith B Zaugg, Matthias Heinemann
Published 2010-01-01

Predictive features of gene expression variation reveal mechanistic link with differential expression

by Olga M Sigalova, Amirreza Shaeiri, Mattia Forneris, Eileen EM Furlong, Judith B Zaugg
Published 2020-08-01

Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions

by Ignacio L. Ibarra, Nele M. Hollmann, Bernd Klaus, Sandra Augsten, Britta Velten, Janosch Hennig, Judith B. Zaugg
Published 2020-01-01

PB1790: LOOKING ‘BENEATH’ THE SURFACE: PROTEOMICS AND GLYCIPROTEOMICS REVEAL NOVEL TARGETS FOR CAR-T CELL THERAPIES IN ACUTE MYELOID LEUKEMIA (AML)

by Josephine Brysting, Yi Liu, Joris Frenz, Jennifer Schwarz, Tim Sauer, Michael Schmitt, Simon Raffel, Simon Renders, Judith B. Zaugg, Ashok Jayavely, Carsten Müller-Tidow
Published 2023-08-01

Haplotype-specific MAPT exon 3 expression regulated by common intronic polymorphisms associated with Parkinsonian disorders

by Mang Ching Lai, Anne-Laure Bechy, Franziska Denk, Emma Collins, Maria Gavriliouk, Judith B. Zaugg, Brent J. Ryan, Richard Wade-Martins, Tara M. Caffrey
Published 2017-10-01

Quantification of Differential Transcription Factor Activity and Multiomics-Based Classification into Activators and Repressors: diffTF

by Ivan Berest, Christian Arnold, Armando Reyes-Palomares, Giovanni Palla, Kasper Dindler Rasmussen, Holly Giles, Peter-Martin Bruch, Wolfgang Huber, Sascha Dietrich, Kristian Helin, Judith B. Zaugg
Published 2019-12-01

Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements

by Ignacio L Ibarra, Vikram S Ratnu, Lucia Gordillo, In‐Young Hwang, Luca Mariani, Kathryn Weinand, Henrik M Hammarén, Jennifer Heck, Martha L Bulyk, Mikhail M Savitski, Judith B Zaugg, Kyung‐Min Noh
Published 2022-08-01

Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension

by Armando Reyes-Palomares, Mingxia Gu, Fabian Grubert, Ivan Berest, Silin Sa, Maya Kasowski, Christian Arnold, Mao Shuai, Rohith Srivas, Simon Miao, Dan Li, Michael P. Snyder, Marlene Rabinovitch, Judith B. Zaugg
Published 2020-04-01

GRaNIE and GRaNPA: inference and evaluation of enhancer‐mediated gene regulatory networks

by Aryan Kamal, Christian Arnold, Annique Claringbould, Rim Moussa, Nila H Servaas, Maksim Kholmatov, Neha Daga, Daria Nogina, Sophia Mueller‐Dott, Armando Reyes‐Palomares, Giovanni Palla, Olga Sigalova, Daria Bunina, Caroline Pabst, Judith B Zaugg
Published 2023-06-01

Identifying a novel role for the master regulator Tal1 in the Endothelial to Hematopoietic Transition

by Yasmin Natalia Serina Secanechia, Isabelle Bergiers, Matt Rogon, Christian Arnold, Nicolas Descostes, Stephanie Le, Natalia López-Anguita, Kerstin Ganter, Chrysi Kapsali, Lea Bouilleau, Aaron Gut, Auguste Uzuotaite, Ayshan Aliyeva, Judith B. Zaugg, Christophe Lancrin
Published 2022-10-01

Drug‐microenvironment perturbations reveal resistance mechanisms and prognostic subgroups in CLL

by Peter‐Martin Bruch, Holly AR Giles, Carolin Kolb, Sophie A Herbst, Tina Becirovic, Tobias Roider, Junyan Lu, Sebastian Scheinost, Lena Wagner, Jennifer Huellein, Ivan Berest, Mark Kriegsmann, Katharina Kriegsmann, Christiane Zgorzelski, Peter Dreger, Judith B Zaugg, Carsten Müller‐Tidow, Thorsten Zenz, Wolfgang Huber, Sascha Dietrich
Published 2022-08-01

P1206: A SINGLE-CELL MULTI-OMIC AND SPATIAL ATLAS OF NODAL B CELL NON-HODGKIN LYMPHOMAS REVEALS PLASTICITY IN B CELL MATURATION AS A DRIVER OF INTRATUMOR HETEROGENEITY

by Donnacha Fitzgerald, Artur Kibler, Marc-A. Baertsch, Tobias Roider, Harald Vohringer, Anastasiia Horlova, Anna Mathioudaki, Bettina Budeus, Mareike Knoll, Erin Chung, Johannes Mammen, Leandra Caille, Verena Passerini, Felix Czernilofsky, Linsha LI, Oliver Weigert, Judith B. Zaugg, Gary P. Nolan, Marc Seifert, Wolfgang Huber, Sacha Dietrich
Published 2023-08-01

Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline

by Marco L. Hennrich, Natalie Romanov, Patrick Horn, Samira Jaeger, Volker Eckstein, Violetta Steeples, Fei Ye, Ximing Ding, Laura Poisa-Beiro, Mang Ching Lai, Benjamin Lang, Jacqueline Boultwood, Thomas Luft, Judith B. Zaugg, Andrea Pellagatti, Peer Bork, Patrick Aloy, Anne-Claude Gavin, Anthony D. Ho
Published 2018-10-01

P1218: A REPROGRAMMING OF THE LYMPH NODE MICROENVIRONMENT UNDERLIES LOSS OF COMPARTMENTALISATION IN AGGRESSIVE LYMPHOMAS

by Anna Mathioudaki, Felix Czernilofsky, Lea Jopp-Saile, Raphael Lutz, Dominik Vonflicht, XI Wang, Marc-A. Baertsch, Harald Vohringer, Tobias Roider, Johannes Mammen, Diana Ordonez-Rueda, Caroline Pabst, Wolfgang Huber, Andreas Trumpp, Carsten Müller-Tidow, Gary P. Nolan, Vladimir Benes, Judith B. Zaugg, Daniel Hübschmann, Simon Haas, Sascha Dietrich
Published 2023-08-01

CDK7/12/13 inhibition targets an oscillating leukemia stem cell network and synergizes with venetoclax in acute myeloid leukemia

by Lixiazi He, Christian Arnold, Judith Thoma, Christian Rohde, Maksim Kholmatov, Swati Garg, Cheng‐Chih Hsiao, Linda Viol, Kaiqing Zhang, Rui Sun, Christina Schmidt, Maike Janssen, Tara MacRae, Karin Huber, Christian Thiede, Josée Hébert, Guy Sauvageau, Julia Spratte, Herbert Fluhr, Gabriela Aust, Carsten Müller‐Tidow, Christof Niehrs, Gislene Pereira, Jörg Hamann, Motomu Tanaka, Judith B Zaugg, Caroline Pabst
Published 2022-04-01