primerJinn: a tool for rationally designing multiplex PCR primer sets for amplicon sequencing and performing in silico PCR

by Jason D. Limberis, John Z. Metcalfe
Published 2023-12-01

Moving Beyond Directly Observed Therapy for Tuberculosis.

by John Z Metcalfe, Max R O'Donnell, David R Bangsberg
Published 2015-09-01

selSeq: A method for the enrichment of non-polyadenylated RNAs including enhancer and long non-coding RNAs for sequencing.

by Jason D Limberis, Alina Nalyvayko, Joel D Ernst, John Z Metcalfe
Published 2023-01-01

A transcriptional signature for active TB: have we found the needle in the haystack?

by Adithya Cattamanchi, Nicholas D Walter, John Z Metcalfe, J Lucian Davis
Published 2013-10-01

A simple, single-tube overlapping amplicon-targeted Illumina sequencing assay.

by Jason D Limberis, Alina Nalyvayko, Joel D Ernst, John Z Metcalfe
Published 2023-01-01

A simple, single-tube overlapping amplicon-targeted Illumina sequencing assay

by Jason D. Limberis, Alina Nalyvayko, Joel D. Ernst, John Z. Metcalfe
Published 2023-01-01

Health care seeking patterns of rifampicin-resistant tuberculosis patients in Harare, Zimbabwe: A prospective cohort study.

by Rebecca Tadokera, Stella Huo, Grant Theron, Collins Timire, Salome Manyau-Makumbirofa, John Z Metcalfe
Published 2021-01-01

Microscopic-observation drug-susceptibility assay for the diagnosis of drug-resistant tuberculosis in Harare, Zimbabwe.

by Beauty Makamure, Jesca Mhaka, Salome Makumbirofa, Reggie Mutetwa, Lucy Mupfumi, Peter Mason, John Z Metcalfe
Published 2013-01-01

Drug-Resistant Tuberculosis in High-Risk Groups, Zimbabwe

by John Z. Metcalfe, Salome Makumbirofa, Beauty Makamure, Charles Sandy, Wilbert Bara, Stanley Mungofa, Philip C. Hopewell, Peter Mason
Published 2014-01-01

Rapid molecular testing for TB to guide respiratory isolation in the U.S.: a cost-benefit analysis.

by Alexander J Millman, David W Dowdy, Cecily R Miller, Robert Brownell, John Z Metcalfe, Adithya Cattamanchi, J Lucian Davis
Published 2013-01-01

Determinants of Multidrug-Resistant Tuberculosis Clusters, California, USA, 2004–2007

by John Z. Metcalfe, Elizabeth Y. Kim, S.-Y. Grace Lin, Adithya Cattamanchi, Peter Oh, Jennifer Flood, Philip C. Hopewell, Midori Kato-Maeda
Published 2010-09-01

Tuberculosis and HIV Co-infection, California, USA, 1993–2008

by John Z. Metcalfe, Travis C. Porco, Janice Westenhouse, Mark Damesyn, Matt Facer, Julia Hill, Qiang Xia, James P. Watt, Philip C. Hopewell, Jennifer Flood
Published 2013-03-01

Tuberculosis progression rates in U.S. Immigrants following screening with interferon-gamma release assays

by Robert J. Blount, Minh-Chi Tran, Charles K. Everett, Adithya Cattamanchi, John Z. Metcalfe, Denise Connor, Cecily R. Miller, Jennifer Grinsdale, Julie Higashi, Payam Nahid
Published 2016-08-01

Prevalence of drug-resistant tuberculosis in Zimbabwe: A health facility-based cross-sectional survey

by Collins Timire, John Z. Metcalfe, Joconiah Chirenda, Jerod N. Scholten, Barbara Manyame-Murwira, Mkhokheli Ngwenya, Ronnie Matambo, Kelvin Charambira, Herbert Mutunzi, Nico Kalisvaart, Charles Sandy
Published 2019-10-01

Clinical and radiographic factors do not accurately diagnose smear-negative tuberculosis in HIV-infected inpatients in Uganda: a cross-sectional study.

by J Lucian Davis, William Worodria, Harriet Kisembo, John Z Metcalfe, Adithya Cattamanchi, Michael Kawooya, Rachel Kyeyune, Saskia den Boon, Krista Powell, Richard Okello, Samuel Yoo, Laurence Huang
Published 2010-03-01

Genetic variants and their association with phenotypic resistance to bedaquiline in Mycobacterium tuberculosis: a systematic review and individual isolate data analysis

by Nabila Ismail, PhD, Emmanuel Rivière, MSc, Jason Limberis, PhD, Stella Huo, MSc, John Z Metcalfe, ProfPhD, Rob M Warren, ProfPhD, Annelies Van Rie, ProfPhD
Published 2021-11-01

Distinct lung microbiota associate with HIV-associated chronic lung disease in children

by Sudha Bhadriraju, Douglas W. Fadrosh, Meera K. Shenoy, Din L. Lin, Kole V. Lynch, Kathryn McCauley, Rashida A. Ferrand, Edith D. Majonga, Grace McHugh, Laurence Huang, Susan V. Lynch, John Z. Metcalfe
Published 2020-09-01

Essential Emergency and Critical Care: a consensus among global clinical experts

by Samuel Akech, Mike English, Thomas G Weiser, Adam D Laytin, Niranjan Kissoon, Jaran Eriksen, Lovenish Bains, Fred Bulamba, Maria Jirwe, Jolene Moore, Mpoki Ulisubisya, Vincent Ioos, Kent Doi, Lee A Wallis, Kapil Dev Soni, Nobhojit Roy, Franco Diaz, Mulinda Nyirenda, Nicholas Risko, Hendry R Sawe, Jacob McKnight, Alexandra Wharton-Smith, Jamie Rylance, Monty Khajanchi, Gavin Wooldridge, Emmanuel Fru Nsutebu, Lisa Kurland, Peter Baker, John C Marshall, Kathryn Rowan, Usha Lalla, Balasubramanian Venkatesh, Cornelius Sendagire, Neill KJ Adhikari, Tim Baker, Brian Rice, Josephine Langton, Elisabeth Riviello, Fiona Muttalib, Francis Mupeta, Jacquie Oliwa, Stefan Swartling Peterson, Andrew G Smith, Lorna Guinness, Megan Cox, Wim Van Damme, John Kellett, Elizabeth M Molyneux, Richard Venn, Andrea B Pembe, Mervyn Mer, Ignacio Martin-Loeches, Raymond Towey, Lina Zhang, Blaise Pascal, Hiral A Shah, Carl Otto Schell, Karima Khalid, Paul D Sonenthal, Alex Sanga, Raphael K. Kayambankadzanja, Adam Asghar, Adrian J Holloway, Ahmed Rhassane El Adib, Alexia Michaelides, Alvaro Coronado Munoz, Amos Muzuka, Analía Fernández, Andreas Wellhagen, Anita Gadgil, Anna Hvarfner, Anuja Abayadeera, Aurélie Godard, Bargo Mahamat Yousif, Bhakti Sarang Ben Morton, Bharath Kumar, Tirupakuzhi Vijayaraghavan, Bobby King, C Louise Thwaites, Chian Wern Tai, Christian Owoo, Dan Brun Petersen, Daniel Tatay, David Lee Skinner, Denis Kinyua, Dhruva Ghosh, Diptesh Aryal, Donald Mlombwa, Duyen Thi, Hanh Bui, Edwin R Lugazia, Ellena Heyns, Ernesto Gerardo Moreno, Esther Banda Kanyangira, Furaha Nzanzu, Gibonce Mwakisambwe, Guy A Richards, Hala Ammar, Halinder S Mangat, Hasanein H Ghali, Hoi Ping Shum, Ibrahim Salim Abdullahi, Ingrid T von der Osten, James S Lee, Jane Kasozi Namagga, Jasmine Armour-Marshall, John Z Metcalfe, Jonas Blixt, Juan Gutierrez Mejia, Juan Ignacio Silesky-Jiménez, Karl Martin Kohne, Kazuhiro Yokobatake, Kristina E. Rudd, Kwame Asante Akuamoah-Boateng, Lars Irestedt, Lia I Losonczy, Margaret Nyaika, Markus Castegren, Matthew Loftus, Matti Reinikainen, Michael Jaung, Michael S Lipnick, Miklos Lipcey, Märit Amanda Halmin, Naman Shah, Natalie L Cobb, Nathan D Nielsen, Neville Vlok, Ntogwiachu Daniel Kobuh, Oscar Fernández Rostello, Patricia Duque, Paul Patrick Mwasapi, Petronella Bjurling-Sjöberg, Piedad Sarmiento, Pryanka Relan, Rebecca Silvers, Rehema Mlay, Rich Branson, Richard J Wang, Richard Kojan, Richard Peter Von Rahden, Rob Mac Sweeney, Rodrigo Genaro Arduini, Rodwell Gundo, Ruyumbu Sixtus, Samson Kwazizira Mndolo, Shada A. Rouhani, Siriel Nanzia Massawe, Steven A Webb, Sunkaru Touray, Susana Guido, Teresa Kortz, Theodoros Aslanidis, Traci A Wolbrink, V Theodore Barnett, Vijay Christopher Kannan, Waleed S Eldebsy, Wangari Waweru-Siika, Wezzie Kumwenda Mwafulirwa, William Obeng, Yasein Omer, Zione Banda
Published 2021-09-01