Integrative meta-analysis of differential gene expression in acute myeloid leukemia.

by Brady G Miller, John A Stamatoyannopoulos
Published 2010-03-01

Widespread site-dependent buffering of human regulatory polymorphism.

by Matthew T Maurano, Hao Wang, Tanya Kutyavin, John A Stamatoyannopoulos
Published 2012-01-01

Predicting human nucleosome occupancy from primary sequence.

by Shobhit Gupta, Jonathan Dennis, Robert E Thurman, Robert Kingston, John A Stamatoyannopoulos, William Stafford Noble
Published 2008-08-01

Role of DNA Methylation in Modulating Transcription Factor Occupancy

by Matthew T. Maurano, Hao Wang, Sam John, Anthony Shafer, Theresa Canfield, Kristen Lee, John A. Stamatoyannopoulos
Published 2015-08-01

Discrete regulatory modules instruct hematopoietic lineage commitment and differentiation

by Grigorios Georgolopoulos, Nikoletta Psatha, Mineo Iwata, Andrew Nishida, Tannishtha Som, Minas Yiangou, John A. Stamatoyannopoulos, Jeff Vierstra
Published 2021-11-01

Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.

by Tommy Kaplan, Xiao-Yong Li, Peter J Sabo, Sean Thomas, John A Stamatoyannopoulos, Mark D Biggin, Michael B Eisen
Published 2011-02-01

Tissue context determines the penetrance of regulatory DNA variation

by Jessica M. Halow, Rachel Byron, Megan S. Hogan, Raquel Ordoñez, Mark Groudine, M. A. Bender, John A. Stamatoyannopoulos, Matthew T. Maurano
Published 2021-05-01

Genetic association of long-chain acyl-CoA synthetase 1 variants with fasting glucose, diabetes, and subclinical atherosclerosis[S]

by Ani Manichaikul, Xin-Qun Wang, Wei Zhao, Mary K. Wojczynski, Kyle Siebenthall, John A. Stamatoyannopoulos, Danish Saleheen, Ingrid B. Borecki, Muredach P. Reilly, Stephen S. Rich, Karin E. Bornfeldt
Published 2016-03-01

Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins

by Alexander J. Federation, Vivek Nandakumar, Brian C. Searle, Andrew Stergachis, Hao Wang, Lindsay K. Pino, Gennifer Merrihew, Ying S. Ting, Nicholas Howard, Tanya Kutyavin, Michael J. MacCoss, John A. Stamatoyannopoulos
Published 2020-02-01

Mapping and Dynamics of Regulatory DNA in Maturing Arabidopsis thaliana Siliques

by Alessandra M. Sullivan, Andrej A. Arsovski, Agnieszka Thompson, Richard Sandstrom, Robert E. Thurman, Shane Neph, Audra K. Johnson, Shawn T. Sullivan, Peter J. Sabo, Fidencio V. Neri, Molly Weaver, Morgan Diegel, Jennifer L. Nemhauser, John A. Stamatoyannopoulos, Kerry L. Bubb, Christine Queitsch
Published 2019-11-01

Leveraging pleiotropy to discover and interpret GWAS results for sleep-associated traits.

by Sung Chun, Sebastian Akle, Athanasios Teodosiadis, Brian E Cade, Heming Wang, Tamar Sofer, Daniel S Evans, Katie L Stone, Sina A Gharib, Sutapa Mukherjee, Lyle J Palmer, David Hillman, Jerome I Rotter, Craig L Hanis, John A Stamatoyannopoulos, Susan Redline, Chris Cotsapas, Shamil R Sunyaev
Published 2022-12-01

Global Regulatory DNA Potentiation by SMARCA4 Propagates to Selective Gene Expression Programs via Domain-Level Remodeling

by John E. Lazar, Sandra Stehling-Sun, Vivek Nandakumar, Hao Wang, Daniel R. Chee, Nicholas P. Howard, Reyes Acosta, Douglass Dunn, Morgan Diegel, Fidencio Neri, Andres Castillo, Sean Ibarrientos, Kristen Lee, Ninnia Lescano, Ben Van Biber, Jemma Nelson, Jessica Halow, Richard Sandstrom, Daniel Bates, Fyodor D. Urnov, Alister P.W. Funnell, John A. Stamatoyannopoulos
Published 2020-05-01

Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana

by Alessandra M. Sullivan, Andrej A. Arsovski, Janne Lempe, Kerry L. Bubb, Matthew T. Weirauch, Peter J. Sabo, Richard Sandstrom, Robert E. Thurman, Shane Neph, Alex P. Reynolds, Andrew B. Stergachis, Benjamin Vernot, Audra K. Johnson, Eric Haugen, Shawn T. Sullivan, Agnieszka Thompson, Fidencio V. Neri III, Molly Weaver, Morgan Diegel, Sanie Mnaimneh, Ally Yang, Timothy R. Hughes, Jennifer L. Nemhauser, Christine Queitsch, John A. Stamatoyannopoulos
Published 2014-09-01