UBASH3A Interacts with PTPN22 to Regulate <i>IL2</i> Expression and Risk for Type 1 Diabetes

by Jeremy R. B. Newman, Patrick Concannon, Yan Ge
Published 2023-05-01

Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data

by Jeremy R. B. Newman, Patrick Concannon, Manuel Tardaguila, Ana Conesa, Lauren M. McIntyre
Published 2018-09-01

Variable selection in omics data: A practical evaluation of small sample sizes.

by Alexander Kirpich, Elizabeth A Ainsworth, Jessica M Wedow, Jeremy R B Newman, George Michailidis, Lauren M McIntyre
Published 2018-01-01

Comprehensive assessment of genetic sequence variants in the antioxidant 'master regulator' NRF2 in idiopathic Parkinson's disease.

by Michael Todorovic, Jeremy R B Newman, Jianguo Shan, Steven Bentley, Stephen A Wood, Peter A Silburn, George D Mellick
Published 2015-01-01

Analysis of Gene Expression Variance in Schizophrenia Using Structural Equation Modeling

by Anna A. Igolkina, Chris Armoskus, Jeremy R. B. Newman, Oleg V. Evgrafov, Lauren M. McIntyre, Sergey V. Nuzhdin, Sergey V. Nuzhdin, Maria G. Samsonova
Published 2018-06-01

Shifts in isoform usage underlie transcriptional differences in regulatory T cells in type 1 diabetes

by Jeremy R. B. Newman, S. Alice Long, Cate Speake, Carla J. Greenbaum, Karen Cerosaletti, Stephen S. Rich, Suna Onengut-Gumuscu, Lauren M. McIntyre, Jane H. Buckner, Patrick Concannon
Published 2023-09-01

Testcrosses are an efficient strategy for identifying <i>cis</i>-regulatory variation: Bayesian analysis of allele-specific expression (BayesASE)

by Brecca R Miller, Alison M Morse, Jacqueline E Borgert, Zihao Liu, Kelsey Sinclair, Gavin Gamble, Fei Zou, Jeremy R B Newman, Luis G León-Novelo, Fabio Marroni, Lauren M McIntyre
Published 2021-03-01

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing

by Lorena de la Fuente, Ángeles Arzalluz-Luque, Manuel Tardáguila, Héctor del Risco, Cristina Martí, Sonia Tarazona, Pedro Salguero, Raymond Scott, Alberto Lerma, Ana Alastrue-Agudo, Pablo Bonilla, Jeremy R. B. Newman, Shunichi Kosugi, Lauren M. McIntyre, Victoria Moreno-Manzano, Ana Conesa
Published 2020-05-01