Inference and effects of barcode multiplets in droplet-based single-cell assays

by Caleb A. Lareau, Sai Ma, Fabiana M. Duarte, Jason D. Buenrostro
Published 2020-02-01

Deep learning-based enhancement of epigenomics data with AtacWorks

by Avantika Lal, Zachary D. Chiang, Nikolai Yakovenko, Fabiana M. Duarte, Johnny Israeli, Jason D. Buenrostro
Published 2021-03-01

Protocol for single-cell ATAC sequencing using combinatorial indexing in mouse lung adenocarcinoma

by Isabella Del Priore, Sai Ma, Jonathan Strecker, Tyler Jacks, Lindsay M. LaFave, Jason D. Buenrostro
Published 2021-06-01

Assessment of computational methods for the analysis of single-cell ATAC-seq data

by Huidong Chen, Caleb Lareau, Tommaso Andreani, Michael E. Vinyard, Sara P. Garcia, Kendell Clement, Miguel A. Andrade-Navarro, Jason D. Buenrostro, Luca Pinello
Published 2019-11-01

A flexible approach for highly multiplexed candidate gene targeted resequencing.

by Georges Natsoulis, John M Bell, Hua Xu, Jason D Buenrostro, Heather Ordonez, Susan Grimes, Daniel Newburger, Michael Jensen, Jacob M Zahn, Nancy Zhang, Hanlee P Ji
Published 2011-01-01

Cell of origin epigenetic priming determines susceptibility to Tet2 mutation

by Giulia Schiroli, Vinay Kartha, Fabiana M. Duarte, Trine A. Kristiansen, Christina Mayerhofer, Rojesh Shrestha, Andrew Earl, Yan Hu, Tristan Tay, Catherine Rhee, Jason D. Buenrostro, David T. Scadden
Published 2024-05-01

Transcriptional States and Chromatin Accessibility Underlying Human Erythropoiesis

by Leif S. Ludwig, Caleb A. Lareau, Erik L. Bao, Satish K. Nandakumar, Christoph Muus, Jacob C. Ulirsch, Kaitavjeet Chowdhary, Jason D. Buenrostro, Narla Mohandas, Xiuli An, Martin J. Aryee, Aviv Regev, Vijay G. Sankaran
Published 2019-06-01

Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM

by Huidong Chen, Luca Albergante, Jonathan Y. Hsu, Caleb A. Lareau, Giosuè Lo Bosco, Jihong Guan, Shuigeng Zhou, Alexander N. Gorban, Daniel E. Bauer, Martin J. Aryee, David M. Langenau, Andrei Zinovyev, Jason D. Buenrostro, Guo-Cheng Yuan, Luca Pinello
Published 2019-04-01

chromVAR: Inferring transcription factor-associated accessibility from single-cell epigenomic data

by Schep, Alicia N., Wu, Beijing, Buenrostro, Jason D., Greenleaf, William J.
Published 2018

Single-cell epigenomic variability reveals functional cancer heterogeneity

by Litzenburger, Ulrike M., Buenrostro, Jason D., Wu, Beijing, Shen, Ying, Sheffield, Nathan C., Kathiria, Arwa, Greenleaf, William J., Chang, Howard Y.
Published 2017