Side effects: substantial non-neutral evolution flanking regulatory sites.

by James G D Prendergast, Colin A Semple
Published 2013-05-01

Shared regulatory sites are abundant in the human genome and shed light on genome evolution and disease pleiotropy.

by Pin Tong, Jack Monahan, James G D Prendergast
Published 2017-03-01

Using machine learning to detect the differential usage of novel gene isoforms

by Xiaopu Zhang, Musa A. Hassan, James G. D. Prendergast
Published 2022-01-01

Sequencing illustrates the transcriptional response of Legionella pneumophila during infection and identifies seventy novel small non-coding RNAs.

by Barbara A Weissenmayer, James G D Prendergast, Amanda J Lohan, Brendan J Loftus
Published 2011-03-01

Meta-analysis of heritability estimates and genome-wide association for tick-borne haemoparasites in African cattle

by Valentina Riggio, Maxime Madder, Michel Labuschagne, Rebecca Callaby, Rebecca Callaby, Rongrong Zhao, Appolinaire Djikeng, Appolinaire Djikeng, Josephus Fourie, James G. D. Prendergast, James G. D. Prendergast, Liam J. Morrison, Liam J. Morrison
Published 2023-07-01

The conservation of human functional variants and their effects across livestock species

by Rongrong Zhao, Andrea Talenti, Lingzhao Fang, Shuli Liu, George Liu, Neil P. Chue Hong, Albert Tenesa, Musa Hassan, James G. D. Prendergast
Published 2022-09-01

Clinical Evaluation of Corridor Disease in Bos indicus (Boran) Cattle Naturally Infected With Buffalo-Derived Theileria parva

by Elizabeth A. J. Cook, Elizabeth A. J. Cook, Tatjana Sitt, E. Jane Poole, Gideon Ndambuki, Stephen Mwaura, Maurine C. Chepkwony, Maurine C. Chepkwony, Perle Latre de Late, Perle Latre de Late, Antoinette A. Miyunga, Richard van Aardt, Giles Prettejohn, David Wragg, David Wragg, James G. D. Prendergast, James G. D. Prendergast, W. Ivan Morrison, Philip Toye, Philip Toye
Published 2021-09-01

Profiling the immune epigenome across global cattle breeds

by Jessica Powell, Andrea Talenti, Andressa Fisch, Johanneke D. Hemmink, Edith Paxton, Philip Toye, Isabel Santos, Beatriz R. Ferreira, Tim K. Connelley, Liam J. Morrison, James G. D. Prendergast
Published 2023-05-01

Inherited Tolerance in Cattle to the Apicomplexan Protozoan Theileria parva is Associated with Decreased Proliferation of Parasite-Infected Lymphocytes

by Perle Latre de Late, Perle Latre de Late, Elizabeth A. J. Cook, Elizabeth A. J. Cook, David Wragg, David Wragg, E. Jane Poole, Gideon Ndambuki, Gideon Ndambuki, Antoinette Aluoch Miyunga, Antoinette Aluoch Miyunga, Maurine C. Chepkwony, Maurine C. Chepkwony, Stephen Mwaura, Nicholas Ndiwa, Giles Prettejohn, Tatjana Sitt, Richard Van Aardt, W. Ivan Morrison, James G. D. Prendergast, James G. D. Prendergast, Philip Toye, Philip Toye
Published 2021-11-01

Species-Specificity of Transcriptional Regulation and the Response to Lipopolysaccharide in Mammalian Macrophages

by Stephen J. Bush, Mary E. B. McCulloch, Zofia M. Lisowski, Charity Muriuki, Emily L. Clark, Rachel Young, Clare Pridans, Clare Pridans, James G. D. Prendergast, Kim M. Summers, David A. Hume
Published 2020-07-01

Arginine to Glutamine Variant in Olfactomedin Like 3 (OLFML3) Is a Candidate for Severe Goniodysgenesis and Glaucoma in the Border Collie Dog Breed

by Carys A. Pugh, Lindsay L. Farrell, Ailsa J. Carlisle, Stephen J. Bush, Adam Ewing, Violeta Trejo-Reveles, Oswald Matika, Arne de Kloet, Caitlin Walsh, Stephen C. Bishop, James G. D. Prendergast, Joe Rainger, Jeffrey J. Schoenebeck, Kim M. Summers
Published 2019-03-01

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication

by Prasun Dutta, Andrea Talenti, Rachel Young, Siddharth Jayaraman, Rebecca Callaby, Santosh Kumar Jadhav, Velu Dhanikachalam, Mayakannan Manikandan, Bhim B. Biswa, Wai Y. Low, John L. Williams, Elizabeth Cook, Phil Toye, Eileen Wall, Appolinaire Djikeng, Karen Marshall, Alan L. Archibald, Suresh Gokhale, Satish Kumar, David A. Hume, James G. D. Prendergast
Published 2020-09-01

Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle

by Valentina Riggio, Abdulfatai Tijjani, Rebecca Callaby, Andrea Talenti, David Wragg, Emmanuel T. Obishakin, Chukwunonso Ezeasor, Frans Jongejan, Ndudim I. Ogo, Fred Aboagye-Antwi, Alassane Toure, Jahashi Nzalawahej, Boubacar Diallo, Ayao Missohou, Adrien M. G. Belem, Appolinaire Djikeng, Nick Juleff, Josephus Fourie, Michel Labuschagne, Maxime Madder, Karen Marshall, James G. D. Prendergast, Liam J. Morrison
Published 2022-09-01

A locus conferring tolerance to Theileria infection in African cattle

by David Wragg, Elizabeth A. J. Cook, Perle Latré de Laté, Tatjana Sitt, Johanneke D. Hemmink, Maurine C. Chepkwony, Regina Njeru, E. Jane Poole, Jessica Powell, Edith A. Paxton, Rebecca Callaby, Andrea Talenti, Antoinette A. Miyunga, Gideon Ndambuki, Stephen Mwaura, Harriet Auty, Oswald Matika, Musa Hassan, Karen Marshall, Timothy Connelley, Liam J. Morrison, B. Mark deC. Bronsvoort, W. Ivan Morrison, Philip G. Toye, James G. D. Prendergast
Published 2022-04-01

A locus conferring tolerance to Theileria infection in African cattle.

by David Wragg, Elizabeth A J Cook, Perle Latré de Laté, Tatjana Sitt, Johanneke D Hemmink, Maurine C Chepkwony, Regina Njeru, E Jane Poole, Jessica Powell, Edith A Paxton, Rebecca Callaby, Andrea Talenti, Antoinette A Miyunga, Gideon Ndambuki, Stephen Mwaura, Harriet Auty, Oswald Matika, Musa Hassan, Karen Marshall, Timothy Connelley, Liam J Morrison, B Mark deC Bronsvoort, W Ivan Morrison, Philip G Toye, James G D Prendergast
Published 2022-04-01

Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer.

by Ian P M Tomlinson, Luis G Carvajal-Carmona, Sara E Dobbins, Albert Tenesa, Angela M Jones, Kimberley Howarth, Claire Palles, Peter Broderick, Emma E M Jaeger, Susan Farrington, Annabelle Lewis, James G D Prendergast, Alan M Pittman, Evropi Theodoratou, Bianca Olver, Marion Walker, Steven Penegar, Ella Barclay, Nicola Whiffin, Lynn Martin, Stephane Ballereau, Amy Lloyd, Maggie Gorman, Steven Lubbe, COGENT Consortium, CORGI Collaborators, EPICOLON Consortium, Bryan Howie, Jonathan Marchini, Clara Ruiz-Ponte, Ceres Fernandez-Rozadilla, Antoni Castells, Angel Carracedo, Sergi Castellvi-Bel, David Duggan, David Conti, Jean-Baptiste Cazier, Harry Campbell, Oliver Sieber, Lara Lipton, Peter Gibbs, Nicholas G Martin, Grant W Montgomery, Joanne Young, Paul N Baird, Steven Gallinger, Polly Newcomb, John Hopper, Mark A Jenkins, Lauri A Aaltonen, David J Kerr, Jeremy Cheadle, Paul Pharoah, Graham Casey, Richard S Houlston, Malcolm G Dunlop
Published 2011-06-01