EFMviz: A COBRA Toolbox Extension to Visualize Elementary Flux Modes in Genome-Scale Metabolic Models

by Chaitra Sarathy, Martina Kutmon, Michael Lenz, Michiel E. Adriaens, Chris T. Evelo, Ilja C.W. Arts
Published 2020-02-01

Comparison of metabolic states using genome-scale metabolic models.

by Chaitra Sarathy, Marian Breuer, Martina Kutmon, Michiel E Adriaens, Chris T Evelo, Ilja C W Arts
Published 2021-11-01

Comparison of metabolic states using genome-scale metabolic models

by Chaitra Sarathy, Marian Breuer, Martina Kutmon, Michiel E. Adriaens, Chris T. Evelo, Ilja C. W. Arts
Published 2021-11-01

The Impact of Amino Acids on Postprandial Glucose and Insulin Kinetics in Humans: A Quantitative Overview

by Bart van Sloun, Gijs H. Goossens, Balazs Erdos, Michael Lenz, Natal van Riel, Ilja C. W. Arts
Published 2020-10-01

Assessing the Contribution of Relative Macrophage Frequencies to Subcutaneous Adipose Tissue

by Marianthi Kalafati, Michael Lenz, Michael Lenz, Michael Lenz, Gökhan Ertaylan, Gökhan Ertaylan, Ilja C. W. Arts, Ilja C. W. Arts, Chris T. Evelo, Chris T. Evelo, Marleen M. J. van Greevenbroek, Ellen E. Blaak, Michiel Adriaens, Martina Kutmon, Martina Kutmon
Published 2021-05-01

Exploring the cellular network of metabolic flexibility in the adipose tissue

by Samar H. K. Tareen, Martina Kutmon, Michiel E. Adriaens, Edwin C. M. Mariman, Theo M. de Kok, Ilja C. W. Arts, Chris T. Evelo
Published 2018-07-01

Allele-specific expression analysis for complex genetic phenotypes applied to a unique dilated cardiomyopathy cohort

by Daan van Beek, Job Verdonschot, Kasper Derks, Han Brunner, Theo M. de Kok, Ilja C. W. Arts, Stephane Heymans, Martina Kutmon, Michiel Adriaens
Published 2023-01-01

Analysis of high-dimensional metabolomics data with complex temporal dynamics using RM-ASCA.

by Balázs Erdős, Johan A Westerhuis, Michiel E Adriaens, Shauna D O'Donovan, Ren Xie, Cécile M Singh-Povel, Age K Smilde, Ilja C W Arts
Published 2023-06-01

Characterization of disease-specific cellular abundance profiles of chronic inflammatory skin conditions from deconvolution of biopsy samples

by Zandra C. Félix Garza, Michael Lenz, Joerg Liebmann, Gökhan Ertaylan, Matthias Born, Ilja C. W. Arts, Peter A. J. Hilbers, Natal A. W. van Riel
Published 2019-08-01

Seeding and feeding milestones: the role of human milk microbes and oligosaccharides in the temporal development of infant gut microbiota

by Martha F. Endika, David J.M. Barnett, Cynthia E. Klostermann, Noortje Kok, Henk A. Schols, Arjen Nauta, Ilja C.W. Arts, John Penders, Koen Venema, Hauke Smidt

Personalized computational model quantifies heterogeneity in postprandial responses to oral glucose challenge.

by Balázs Erdős, Bart van Sloun, Michiel E Adriaens, Shauna D O'Donovan, Dominique Langin, Arne Astrup, Ellen E Blaak, Ilja C W Arts, Natal A W van Riel
Published 2021-03-01

E-DES-PROT: A novel computational model to describe the effects of amino acids and protein on postprandial glucose and insulin dynamics in humans

by Bart van Sloun, Gijs H. Goossens, Balázs Erdõs, Shauna D. O’Donovan, Cécile M. Singh-Povel, Jan M.W. Geurts, Natal A.W. van Riel, Ilja C.W. Arts
Published 2023-03-01

Microbiota-dependent influence of prebiotics on the resilience of infant gut microbiota to amoxicillin/clavulanate perturbation in an in vitro colon model

by Martha F. Endika, David J. M. Barnett, David J. M. Barnett, Cynthia E. Klostermann, Henk A. Schols, Ilja C. W. Arts, John Penders, Arjen Nauta, Hauke Smidt, Koen Venema
Published 2023-05-01

Profiling Cellular Processes in Adipose Tissue during Weight Loss Using Time Series Gene Expression

by Samar H. K. Tareen, Michiel E. Adriaens, Ilja C. W. Arts, Theo M. de Kok, Roel G. Vink, Nadia J. T. Roumans, Marleen A. van Baak, Edwin C. M. Mariman, Chris T. Evelo, Martina Kutmon
Published 2018-10-01

Leveraging continuous glucose monitoring for personalized modeling of insulin-regulated glucose metabolism

by Balázs Erdős, Shauna D. O’Donovan, Michiel E. Adriaens, Anouk Gijbels, Inez Trouwborst, Kelly M. Jardon, Gijs H. Goossens, Lydia A. Afman, Ellen E. Blaak, Natal A. W. van Riel, Ilja C. W. Arts
Published 2024-04-01

Quantifying the contribution of triglycerides to metabolic resilience through the mixed meal model

by Shauna D. O’Donovan, Balázs Erdős, Doris M. Jacobs, Anne J. Wanders, E. Louise Thomas, Jimmy D. Bell, Milena Rundle, Gary Frost, Ilja C.W. Arts, Lydia A. Afman, Natal A.W. van Riel
Published 2022-11-01

A computational model of postprandial adipose tissue lipid metabolism derived using human arteriovenous stable isotope tracer data.

by Shauna D O'Donovan, Michael Lenz, Roel G Vink, Nadia J T Roumans, Theo M C M de Kok, Edwin C M Mariman, Ralf L M Peeters, Natal A W van Riel, Marleen A van Baak, Ilja C W Arts
Published 2019-10-01

Longitudinal associations of physical activity with plasma metabolites among colorectal cancer survivors up to 2 years after treatment

by Eline H. van Roekel, Martijn J. L. Bours, Linda van Delden, Stéphanie O. Breukink, Michèl Aquarius, Eric T. P. Keulen, Audrey Gicquiau, Vivian Viallon, Sabina Rinaldi, Paolo Vineis, Ilja C. W. Arts, Marc J. Gunter, Michael F. Leitzmann, Augustin Scalbert, Matty P. Weijenberg
Published 2021-07-01

Quantifying the effect of nutritional interventions on metabolic resilience using personalized computational models

by Shauna D. O’Donovan, Milena Rundle, E. Louise Thomas, Jimmy D. Bell, Gary Frost, Doris M. Jacobs, Anne Wanders, Ryan de Vries, Edwin C.M. Mariman, Marleen A. van Baak, Luc Sterkman, Max Nieuwdorp, Albert K. Groen, Ilja C.W. Arts, Natal A.W. van Riel, Lydia A. Afman
Published 2024-04-01

Impact of early events and lifestyle on the gut microbiota and metabolic phenotypes in young school-age children

by Huanzi Zhong, John Penders, Zhun Shi, Huahui Ren, Kaiye Cai, Chao Fang, Qiuxia Ding, Carel Thijs, Ellen E. Blaak, Coen D. A. Stehouwer, Xun Xu, Huanming Yang, Jian Wang, Jun Wang, Daisy M. A. E. Jonkers, Ad A. M. Masclee, Susanne Brix, Junhua Li, Ilja C. W. Arts, Karsten Kristiansen
Published 2019-01-01