Wisdom of crowds for robust gene network inference

by Marbach, Daniel, Holmes, Benjamin Ray, Kellis, Manolis, DREAM5 Consortium
Published 2014

CRISPRseek: A Bioconductor Package to Identify Target-Specific Guide RNAs for CRISPR-Cas9 Genome-Editing Systems

by Zhu, Lihua J., Holmes, Benjamin Ray, Aronin, Neil, Brodsky, Michael H.
Published 2014

Comprehensive Mapping of Key Regulatory Networks that Drive Oncogene Expression

by Lin, Lin, Holmes, Benjamin Ray, Shen, Max Walt, Gifford, David K
Published 2021

Engineered CRISPR-Cas9 nuclease with expanded targeting space

by Nishimasu, Hiroshi, Shi, Xi, Ishiguro, Soh, Gao, Linyi, Hirano, Seiichi, Okazaki, Sae, Noda, Taichi, Abudayyeh, Omar O., Gootenberg, Jonathan S, Mori, Hideto, Oura, Seiya, Holmes, Benjamin Ray, Tanaka, Mamoru, Seki, Motoaki, Hirano, Hisato, Aburatani, Hiroyuki, Ishitani, Ryuichiro, Ikawa, Masahito, Yachie, Nozomu, Zhang, Feng, Nureki, Osamu, Zhang, Feng
Published 2020

Chemogenetic System Demonstrates That Cas9 Longevity Impacts Genome Editing Outcomes

by Sreekanth, Vedagopuram, Zhou, Qingxuan, Kokkonda, Praveen, Bermudez-Cabrera, Heysol C., Lim, Donghyun, Law, Benjamin K., Holmes, Benjamin Ray, Chaudhary, Santosh K., Pergu, Rajaiah, Leger, Brittany S., Walker, James A., Gifford, David K, Sherwood, Richard I., Choudhary, Amit
Published 2020