CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments

by H. Atakan Ekiz, Christopher J. Conley, W. Zac Stephens, Ryan M. O’Connell
Published 2020-05-01

Maternal schistosomiasis impairs offspring Interleukin-4 production and B cell expansion.

by Diana Cortés-Selva, Lisa Gibbs, Andrew Ready, H Atakan Ekiz, Ryan O'Connell, Bartek Rajwa, Keke C Fairfax
Published 2021-02-01

Interferon Gamma-Inducible NAMPT in Melanoma Cells Serves as a Mechanism of Resistance to Enhance Tumor Growth

by Cindy Barba, H. Atakan Ekiz, William Weihao Tang, Arevik Ghazaryan, Mason Hansen, Soh-Hyun Lee, Warren Peter Voth, Ryan Michael O’Connell
Published 2023-02-01

An immune-humanized patient-derived xenograft model of estrogen-independent, hormone receptor positive metastatic breast cancer

by Sandra D. Scherer, Alessandra I. Riggio, Fadi Haroun, Yoko S. DeRose, H. Atakan Ekiz, Maihi Fujita, Jennifer Toner, Ling Zhao, Zheqi Li, Steffi Oesterreich, Ahmed A. Samatar, Alana L. Welm
Published 2021-10-01

Mitochondrial Pyruvate Carrier 1 Promotes Peripheral T Cell Homeostasis through Metabolic Regulation of Thymic Development

by Andrew G. Ramstead, Jared A. Wallace, Soh-Hyun Lee, Kaylyn M. Bauer, William W. Tang, H. Atakan Ekiz, Thomas E. Lane, Ahmad A. Cluntun, Matthew L. Bettini, June L. Round, Jared Rutter, Ryan M. O’Connell
Published 2020-03-01

Epithelial-myeloid exchange of MHC class II constrains immunity and microbiota composition

by W. Zac Stephens, Jason L. Kubinak, Arevik Ghazaryan, Kaylyn M. Bauer, Rickesha Bell, Kate Buhrke, Tyson R. Chiaro, Allison M. Weis, William W. Tang, Josh K. Monts, Ray Soto, H. Atakan Ekiz, Ryan M. O’Connell, June L. Round
Published 2021-11-01

A Stat1 bound enhancer promotes Nampt expression and function within tumor associated macrophages

by Thomas B. Huffaker, H. Atakan Ekiz, Cindy Barba, Soh-Hyun Lee, Marah C. Runtsch, Morgan C. Nelson, Kaylyn M. Bauer, William W. Tang, Timothy L. Mosbruger, James E. Cox, June L. Round, Warren P. Voth, Ryan M. O’Connell
Published 2021-05-01

PlaqView 2.0: A comprehensive web portal for cardiovascular single-cell genomics

by Wei Feng Ma, Wei Feng Ma, Adam W. Turner, Christina Gancayco, Doris Wong, Doris Wong, Yipei Song, Yipei Song, Jose Verdezoto Mosquera, Jose Verdezoto Mosquera, Gaëlle Auguste, Chani J. Hodonsky, Ajay Prabhakar, H. Atakan Ekiz, Sander W. van der Laan, Clint L. Miller, Clint L. Miller, Clint L. Miller
Published 2022-08-01