Higher-order chromatin structure: bridging physics and biology

by Fudenberg, Geoffrey, Mirny, Leonid A.
Published 2016

Formation of Chromosomal Domains by Loop Extrusion

by Fudenberg, Geoffrey, Imakaev, Maksim Viktorovich, Lu, Carolyn, Goloborodko, Anton, Abdennur, Nezar Alexander, Mirny, Leonid A.
Published 2016

Modeling chromosomes: Beyond pretty pictures

by Imakaev, Maksim Viktorovich, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2017

Molecular basis of CTCF binding polarity in genome folding

by Nora, Elphège P, Caccianini, Laura, Fudenberg, Geoffrey, So, Kevin, Kameswaran, Vasumathi, Nagle, Abigail, Uebersohn, Alec, Hajj, Bassam, Saux, Agnès Le, Coulon, Antoine, Mirny, Leonid A, Pollard, Katherine S, Dahan, Maxime, Bruneau, Benoit G
Published 2021

Organization of the Mitotic Chromosome

by Naumova, Natalia, Zhan, Ye, Lajoie, Bryan R., Dekker, Job, Imakaev, Maksim Viktorovich, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2017

History of chromosome rearrangements reflects the spatial organization of yeast chromosomes

by Khrameeva, Ekaterina E., Gelfand, Mikhail S., Fudenberg, Geoffrey, Mirny, Leonid A
Published 2017

Emerging Evidence of Chromosome Folding by Loop Extrusion

by Fudenberg, Geoffrey, Abdennur, Nezar Alexander, Imakaev, Maxim, Goloborodko, Anton, Mirny, Leonid A.
Published 2020

Polymer Models of Topological Insulators

by Doyle, Boryana G, Imakaev, Maxim, Fudenberg, Geoffrey, Mirny, Leonid Alex
Published 2014

Chromosomal Architecture Changes upon Cell Differentiation

by Imakaev, Maxim, Fudenberg, Geoffrey, Mirny, Leonid Alex
Published 2014

Polymer Models of Yeast S. cerevisiae Genome Organization

by Fudenberg, Geoffrey, Belton, Jon-Matthew, Goloborodko, Anton, Imakaev, Maxim, Dekker, Job, Mirny, Leonid Alex
Published 2014

SMC complexes differentially compact mitotic chromosomes according to genomic context

by Schalbetter, Stephanie Andrea, Belton, Jon-Matthew, Miles, Catrina, Yu, Miao, Dekker, Job, Baxter, Jonathan, Goloborodko, Anton, Fudenberg, Geoffrey, Mirny, Leonid A
Published 2018

S cerevisiae Genome as a Confined Equilibrium Polymer Brush

by Goloborodko, Anton, Belton, Jon Matthew, Fudenberg, Geoffrey, Imakaev, Maxim, Dekker, Job, Mirny, Leonid Alex
Published 2014

Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells

by Kind, Jop, Pagie, Ludo, de Vries, Sandra S., Nahidiazar, Leila, Dey, Siddharth S., Bienko, Magda, Zhan, Ye, Lajoie, Bryan, de Graaf, Carolyn A., Amendola, Mario, Jalink, Kees, Dekker, Job, van Oudenaarden, Alexander, van Steensel, Bas, Fudenberg, Geoffrey, Imakaev, Maksim Viktorovich, Mirny, Leonid A
Published 2017

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

by Mizuguchi, Takeshi, Fudenberg, Geoffrey, Mehta, Sameet, Belton, Jon-Matthew, Taneja, Nitika, Folco, Hernan Diego, FitzGerald, Peter, Dekker, Job, Mirny, Leonid A., Barrowman, Jemima, Grewal, Shiv I. S.
Published 2016

Super-resolution imaging reveals distinct chromatin folding for different epigenetic states

by Boettiger, Alistair N., Bintu, Bogdan, Moffitt, Jeffrey R., Wang, Siyuan, Beliveau, Brian J., Wu, Chao-ting, Zhuang, Xiaowei, Fudenberg, Geoffrey, Imakaev, Maksim Viktorovich, Mirny, Leonid A
Published 2017

Iterative Correction of Hi-C Data Reveals Hallmarks of Chromosome Organization

by Imakaev, Maxim, Fudenberg, Geoffrey, McCord, Rachel Patton, Naumova, Natalia, Goloborodko, Anton, Lajoie, Bryan R., Dekker, Job, Mirny, Leonid A
Published 2014

Molecular basis of CTCF binding polarity in genome folding.

by Nora, Elphège P, Caccianini, Laura, Fudenberg, Geoffrey, So, Kevin, Kameswaran, Vasumathi, Nagle, Abigail, Uebersohn, Alec, Hajj, Bassam, Saux, Agnès Le, Coulon, Antoine, Mirny, Leonid A, Pollard, Katherine S, Dahan, Maxime, Bruneau, Benoit G
Published 2020

Three-Dimensional Chromosome Organization in Eukaryotes

by Fudenberg, Geoffrey
Published 2015

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions

by Doyle, Boryana, Fudenberg, Geoffrey, Imakaev, Maxim, Mirny, Leonid A.
Published 2014

Two independent modes of chromatin organization revealed by cohesin removal

by Schwarzer, Wibke, Abdennur, Nezar, Goloborodko, Anton, Pekowska, Aleksandra, Fudenberg, Geoffrey, Loe-Mie, Yann, Fonseca, Nuno A, Huber, Wolfgang, Haering, Christian H., Mirny, Leonid A, Spitz, Francois
Published 2020