CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data.

by Cairns, Jonathan, Freire-Pritchett, Paula, Wingett, Steven W, Várnai, Csilla, Dimond, Andrew, Plagnol, Vincent, Zerbino, Daniel, Schoenfelder, Stefan, Javierre, Biola-Maria, Osborne, Cameron, Fraser, Peter, Spivakov, Mikhail
Published 2019

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

by Javierre, Biola M, Burren, Oliver S, Wilder, Steven P, Kreuzhuber, Roman, Hill, Steven M, Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W, Várnai, Csilla, Thiecke, Michiel J, Burden, Frances, Farrow, Samantha, Cutler, Antony J, Rehnstrom, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, The, BLUEPRINT Consortium, Stunnenberg, Hendrik G, Todd, John A, Zerbino, Daniel R, Stegle, Oliver, Ouwehand, Willem Hendrik, Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter
Published 2017

Ribosome collisions trigger cis-acting feedback inhibition of translation initiation.

by Juszkiewicz, Szymon, Slodkowicz, Greg, Lin, Zhewang, Freire-Pritchett, Paula, Peak-Chew, Sew-Yeu, Hegde, Ramanujan S
Published 2020

Detecting chromosomal interactions in Capture Hi-C data with CHiCAGO and companion tools.

by Freire-Pritchett, Paula, Ray-Jones, Helen, Della Rosa, Monica, Eijsbouts, Chris Q, Orchard, William R, Wingett, Steven W, Wallace, Chris, Cairns, Jonathan, Spivakov, Mikhail, Malysheva, Valeriya
Published 2022

Promoter interactome of human embryonic stem cell-derived cardiomyocytes connects GWAS regions to cardiac gene networks.

by Choy, Mun-Kit, Javierre, Biola M, Williams, Simon G, Baross, Stephanie L, Liu, Yingjuan, Wingett, Steven W, Akbarov, Artur, Wallace, Chris, Freire-Pritchett, Paula, Rugg-Gunn, Peter J, Spivakov, Mikhail, Fraser, Peter, Keavney, Bernard D
Published 2018

Long-Range Enhancer Interactions Are Prevalent in Mouse Embryonic Stem Cells and Are Reorganized upon Pluripotent State Transition.

by Novo, Clara Lopes, Javierre, Biola-Maria, Cairns, Jonathan, Segonds-Pichon, Anne, Wingett, Steven W, Freire-Pritchett, Paula, Furlan-Magaril, Mayra, Schoenfelder, Stefan, Fraser, Peter, Rugg-Gunn, Peter J
Published 2018

Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells.

by Koohy, Hashem, Bolland, Daniel J, Matheson, Louise S, Schoenfelder, Stefan, Stellato, Claudia, Dimond, Andrew, Várnai, Csilla, Chovanec, Peter, Chessa, Tamara, Denizot, Jeremy, Manzano Garcia, Raquel, Wingett, Steven W, Freire-Pritchett, Paula, Nagano, Takashi, Hawkins, Phillip, Stephens, Len, Elderkin, Sarah, Spivakov, Mikhail, Fraser, Peter, Corcoran, Anne E, Varga-Weisz, Patrick D
Published 2019

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters.

by Javierre, Biola M, Burren, Oliver S, Wilder, Steven P, Kreuzhuber, Roman, Hill, Steven M, Sewitz, Sven, Cairns, Jonathan, Wingett, Steven W, Várnai, Csilla, Thiecke, Michiel J, Burden, Frances, Farrow, Samantha, Cutler, Antony J, Rehnström, Karola, Downes, Kate, Grassi, Luigi, Kostadima, Myrto, Freire-Pritchett, Paula, Wang, Fan, BLUEPRINT Consortium, Stunnenberg, Hendrik G, Todd, John A, Zerbino, Daniel R, Stegle, Oliver, Ouwehand, Willem H, Frontini, Mattia, Wallace, Chris, Spivakov, Mikhail, Fraser, Peter
Published 2016

Epigenetic Regulation of Vascular Smooth Muscle Cells by Histone H3 Lysine 9 Dimethylation Attenuates Target Gene-Induction by Inflammatory Signaling.

by Harman, Jennifer L, Dobnikar, Lina, Chappell, Joel, Stokell, Benjamin G, Dalby, Amanda, Foote, Kirsty, Finigan, Alison, Freire-Pritchett, Paula, Taylor, Annabel L, Worssam, Matthew D, Madsen, Ralitsa R, Loche, Elena, Uryga, Anna, Bennett, Martin R, Jørgensen, Helle F
Published 2019