Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL)

by Konstantinos A. Kyritsis, Nikolaos Pechlivanis, Nikolaos Pechlivanis, Fotis Psomopoulos
Published 2023-11-01

Data Discovery Paradigms: User Requirements and Recommendations for Data Repositories

by Mingfang Wu, Fotis Psomopoulos, Siri Jodha Khalsa, Anita de Waard
Published 2019-01-01

Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1

by Aimilia-Christina Vagiona, Miguel A. Andrade-Navarro, Fotis Psomopoulos, Spyros Petrakis
Published 2020-09-01

A mini-review on perturbation modelling across single-cell omic modalities

by George I. Gavriilidis, Vasileios Vasileiou, Aspasia Orfanou, Naveed Ishaque, Fotis Psomopoulos
Published 2024-12-01

Exploring plant diversity through soil DNA in Thai national parks for influencing land reform and agriculture planning

by Maslin Osathanunkul, Nipitpong Sawongta, Wittaya Pheera, Nikolaos Pechlivanis, Fotis Psomopoulos, Panagiotis Madesis
Published 2021-08-01

A Computational Framework for Pattern Detection on Unaligned Sequences: An Application on SARS-CoV-2 Data

by Nikolaos Pechlivanis, Nikolaos Pechlivanis, Anastasios Togkousidis, Maria Tsagiopoulou, Stefanos Sgardelis, Ilias Kappas, Fotis Psomopoulos
Published 2021-05-01

Microbial co-occurrence network demonstrates spatial and climatic trends for global soil diversity

by Nikos Pechlivanis, Georgios Karakatsoulis, Konstantinos Kyritsis, Maria Tsagiopoulou, Stefanos Sgardelis, Ilias Kappas, Fotis Psomopoulos
Published 2024-06-01

De novo transcriptome assembly of two contrasting pumpkin cultivars

by Aliki Xanthopoulou, Fotis Psomopoulos, Ioannis Ganopoulos, Maria Manioudaki, Athanasios Tsaftaris, Irini Nianiou-Obeidat, Panagiotis Madesis
Published 2016-03-01

miRkit: R framework analyzing miRNA PCR array data

by Maria Tsagiopoulou, Anastasis Togkousidis, Nikolaos Pechlivanis, Maria Christina Maniou, Aristea Batsali, Angelos Matheakakis, Charalampos Pontikoglou, Fotis Psomopoulos
Published 2021-09-01

Comparative metagenomics reveals alterations in the soil bacterial community driven by N-fertilizer and Amino 16® application in lettuce

by Apostolos Kalivas, Ioannis Ganopoulos, Fotis Psomopoulos, Ioannis Grigoriadis, Aliki Xanthopoulou, Evangelos Hatzigiannakis, Maslin Osathanunkul, Athanasios Tsaftaris, Panagiotis Madesis
Published 2017-12-01

A FAIRification roadmap for ELIXIR Software Management Plans

by Olga Giraldo, Renato Alves, Dimitrios Bampalikis, Jose Fernandez, Eva Martin del Pico, Fotis Psomopoulos, Allegra Via, Leyla Jael Castro
Published 2022-10-01

The Calcitriol/Vitamin D Receptor System Regulates Key Immune Signaling Pathways in Chronic Lymphocytic Leukemia

by Marina Gerousi, Fotis Psomopoulos, Konstantia Kotta, Maria Tsagiopoulou, Niki Stavroyianni, Achilles Anagnostopoulos, Athanasios Anastasiadis, Maria Gkanidou, Ioannis Kotsianidis, Stavroula Ntoufa, Kostas Stamatopoulos
Published 2021-01-01

High risk HPV-positive women cervicovaginal microbial profiles in a Greek cohort: a retrospective analysis of the GRECOSELF study

by Electra Sofou, Glykeria Gkoliou, Glykeria Gkoliou, Nikolaos Pechlivanis, Nikolaos Pechlivanis, Konstantinos Pasentsis, Kimon Chatzistamatiou, Fotis Psomopoulos, Theodoros Agorastos, Kostas Stamatopoulos, Kostas Stamatopoulos
Published 2023-11-01

Chronic lymphocytic leukemias with trisomy 12 show a distinct DNA methylation profile linked to altered chromatin activation

by Maria Tsagiopoulou, Vicente Chapaprieta, Martí Duran-Ferrer, Theodoros Moysiadis, Fotis Psomopoulos, Panagoula Kollia, Nikos Papakonstantinou, Elias Campo, Kostas Stamatopoulos, Jose I. Martin-Subero
Published 2020-02-01

UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction

by Maria Tsagiopoulou, Maria Christina Maniou, Nikolaos Pechlivanis, Nikolaos Pechlivanis, Anastasis Togkousidis, Michaela Kotrová, Tobias Hutzenlaub, Tobias Hutzenlaub, Ilias Kappas, Anastasia Chatzidimitriou, Fotis Psomopoulos
Published 2021-05-01

Infrequent “chronic lymphocytic leukemia-specific” immunoglobulin stereotypes in aged individuals with or without low-count monoclonal B-cell lymphocytosis

by Andreas Agathangelidis, Chrysi Galigalidou, Lydia Scarfò, Theodoros Moysiadis, Alessandra Rovida, Maria Gounari, Fotis Psomopoulos, Pamela Ranghetti, Alex Galanis, Frederic Davi, Kostas Stamatopoulos, Anastasia Chatzidimitriou, Paolo Ghia
Published 2020-06-01

Introducing the FAIR Principles for research software

by Michelle Barker, Neil P. Chue Hong, Daniel S. Katz, Anna-Lena Lamprecht, Carlos Martinez-Ortiz, Fotis Psomopoulos, Jennifer Harrow, Leyla Jael Castro, Morane Gruenpeter, Paula Andrea Martinez, Tom Honeyman
Published 2022-10-01

How does software fit into the FDO landscape?

by Carlos Martinez-Ortiz, Carole Goble, Daniel Katz, Tom Honeyman, Paula Martinez, Michelle Barker, Leyla Jael Castro, Neil Chue Hong, Morane Gruenpeter, Jennifer Harrow, Anna-Lena Lamprecht, Fotis Psomopoulos
Published 2022-10-01

P605: IMMUNOGENETICS AND ANTIGEN REACTIVITY PROFILING CONTRIBUTE TO UNRAVELLING THE ONTOGENY OF CLL STEREOTYPED SUBSET #4

by Anastasia Iatrou, Electra Sofou, Eleni Kotroni, Lesley Ann Sutton, Michela Frenquelli, Raphael Sandaltzopoulos, Ioanna Sakellari, Niki Stavrogianni, Fotis Psomopoulos, Paolo Ghia, Richard Rosenquist, Andreas Agathangelidis, Anastasia Chatzidimitriou, Kostas Stamatopoulos
Published 2023-08-01

P835: IN SILICO PREDICTION REVEALS PUTATIVE T-CELL CLASS I/II NEOEPITOPES WITHIN THE CLONOTYPIC IMMUNOGLOBULIN HEAVY AND LIGHT CHAINS IN PATIENTS WITH MULTIPLE MYELOMA

by Glykeria Gkoliou, Nikos Pechlivanis, Sofia Chatzileontiadou, Charikleia Xydopoulou, Christina Frouzaki, Georgios Karakatsoulis, Elisavet Vlachonikola, Marina Gerousi, Fotis Psomopoulos, Alexandra Siorenta, Maria Papaioannou, Katerina Chlichlia, Kostas Stamatopoulos, Evdoxia Hatjiharissi, Anastasia Chatzidimitriou
Published 2023-08-01