The effect of ovine milk fermentation on the antithrombotic properties of polar lipids

by Ronan Lordan, Aaron M. Walsh, Fiona Crispie, Laura Finnegan, Paul D. Cotter, Ioannis Zabetakis
Published 2019-03-01

Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples

by Aoife J. McHugh, Min Yap, Fiona Crispie, Conor Feehily, Colin Hill, Paul D. Cotter
Published 2021-02-01

A Multiomic Approach to Investigate the Effects of a Weight Loss Program on the Intestinal Health of Overweight Horses

by Nicola Walshe, Raul Cabrera-Rubio, Raul Cabrera-Rubio, Roisin Collins, Antonella Puggioni, Vivian Gath, Fiona Crispie, Fiona Crispie, Paul D. Cotter, Paul D. Cotter, Paul D. Cotter, Lorraine Brennan, Grace Mulcahy, Grace Mulcahy, Vivienne Duggan
Published 2021-06-01

Species classifier choice is a key consideration when analysing low-complexity food microbiome data

by Aaron M. Walsh, Fiona Crispie, Orla O’Sullivan, Laura Finnegan, Marcus J. Claesson, Paul D. Cotter
Published 2018-03-01

Analysis of the milk kefir pan-metagenome reveals four community types, core species, and associated metabolic pathways

by Liam H. Walsh, Mairéad Coakley, Aaron M. Walsh, Fiona Crispie, Paul W. O’Toole, Paul D. Cotter
Published 2023-10-01

Caprine milk fermentation enhances the antithrombotic properties of cheese polar lipids

by Ronan Lordan, Aaron Walsh, Fiona Crispie, Laura Finnegan, Martina Demuru, Alexandros Tsoupras, Paul D. Cotter, Ioannis Zabetakis
Published 2019-10-01

Insights into the Adolescent Cystic Fibrosis Airway Microbiome Using Shotgun Metagenomics

by Gillian McDermott, Aaron Walsh, Fiona Crispie, Susanna Frost, Peter Greally, Paul D. Cotter, Orla O’Sullivan, Julie Renwick
Published 2024-03-01

High Throughput Sequencing for the Detection and Characterization of RNA Viruses

by Amy H. Fitzpatrick, Amy H. Fitzpatrick, Amy H. Fitzpatrick, Agnieszka Rupnik, Helen O'Shea, Fiona Crispie, Sinéad Keaveney, Paul Cotter
Published 2021-02-01

Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

by Aaron M. Walsh, Fiona Crispie, Kieran Kilcawley, Orla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Published 2017-02-01

Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir

by Aaron M. Walsh, Fiona Crispie, Kieran Kilcawley, Orla O’Sullivan, Maurice G. O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Published 2016-10-01

Maternal and/or post-weaning supplementation with Bacillus altitudinis spores modulates the microbial composition of colostrum, digesta and faeces in pigs

by Ruth Rattigan, Peadar G. Lawlor, Paul Cormican, Daniel Crespo-Piazuelo, James Cullen, John P. Phelan, Samir Ranjitkar, Fiona Crispie, Gillian E. Gardiner
Published 2023-06-01

Fine-tuning of post-weaning pig microbiome structure and functionality by in-feed zinc oxide and antibiotics use

by Juan M. Ortiz Sanjuán, Juan M. Ortiz Sanjuán, Edgar G. Manzanilla, Edgar G. Manzanilla, Raúl Cabrera-Rubio, Raúl Cabrera-Rubio, Fiona Crispie, Fiona Crispie, Paul D. Cotter, Paul D. Cotter, Paul D. Cotter, Juan J. Garrido, Daniel Ekhlas, Daniel Ekhlas, Lorcan O’Neill, Lorcan O’Neill, Héctor Argüello
Published 2024-02-01

Correction: N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota.

by Matteo M Pusceddu, Sahar El Aidy, Fiona Crispie, Orla O'Sullivan, Paul Cotter, Catherine Stanton, Philip Kelly, John F Cryan, Timothy G Dinan
Published 2015-01-01

N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota.

by Matteo M Pusceddu, Sahar El Aidy, Fiona Crispie, Orla O'Sullivan, Paul Cotter, Catherine Stanton, Philip Kelly, John F Cryan, Timothy G Dinan
Published 2015-01-01

Oral Delivery of Nisin in Resistant Starch Based Matrices Alters the Gut Microbiota in Mice

by Ronan Gough, Ronan Gough, Raúl Cabrera Rubio, Raúl Cabrera Rubio, Paula M. O'Connor, Paula M. O'Connor, Fiona Crispie, Fiona Crispie, André Brodkorb, Song Miao, Colin Hill, Colin Hill, Reynolds P. Ross, Reynolds P. Ross, Paul D. Cotter, Paul D. Cotter, Kanishka N. Nilaweera, Mary C. Rea, Mary C. Rea
Published 2018-06-01

Intestinal microbiota modulation and improved growth in pigs with post-weaning antibiotic and ZnO supplementation but only subtle microbiota effects with Bacillus altitudinis

by Daniel Crespo-Piazuelo, Peadar G. Lawlor, Samir Ranjitkar, Paul Cormican, Carmen Villodre, Meike A. Bouwhuis, Alan Marsh, Fiona Crispie, Ruth Rattigan, Gillian E. Gardiner
Published 2021-12-01

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study

by Barry Linnane, Aaron M. Walsh, Calum J. Walsh, Fiona Crispie, Orla O’Sullivan, Paul D. Cotter, Michael McDermott, Julie Renwick, Paul McNally
Published 2021-02-01

<i>Lactobacillus salivarius</i> UCC118™ Dampens Inflammation and Promotes Microbiota Recovery to Provide Therapeutic Benefit in a DSS-Induced Colitis Model

by Namrata Iyer, Michelle A. Williams, Amy A. O’Callaghan, Elaine Dempsey, Raul Cabrera-Rubio, Mathilde Raverdeau, Fiona Crispie, Paul D. Cotter, Sinéad C. Corr
Published 2022-07-01

Kefir4All, a citizen science initiative to raise awareness of the roles that microbes play in food fermentation

by Liam H. Walsh, Samuel Breselge, José Guilherme Prado Martin, Mairéad Coakley, Eimear Ferguson, Aimee Stapleton, Fiona Crispie, Paul W. O'Toole, Paul D. Cotter
Published 2024-04-01

Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics

by Elena A. Alexa (Oniciuc), Calum J. Walsh, Laura M. Coughlan, Amal Awad, Cezara A. Simon, Lorena Ruiz, Fiona Crispie, Paul D. Cotter, Avelino Alvarez-Ordóñez
Published 2020-02-01