Characteristics and Validation Techniques for PCA-Based Gene-Expression Signatures

by Anders E. Berglund, Eric A. Welsh, Steven A. Eschrich
Published 2017-01-01

Escape Excel: A tool for preventing gene symbol and accession conversion errors.

by Eric A Welsh, Paul A Stewart, Brent M Kuenzi, James A Eschrich
Published 2017-01-01

Evaluating somatic tumor mutation detection without matched normal samples

by Jamie K. Teer, Yonghong Zhang, Lu Chen, Eric A. Welsh, W. Douglas Cress, Steven A. Eschrich, Anders E. Berglund
Published 2017-09-01

Multi-Omics and Informatics Analysis of FFPE Tissues Derived from Melanoma Patients with Long/Short Responses to Anti-PD1 Therapy Reveals Pathways of Response

by Saurabh K. Garg, Eric A. Welsh, Bin Fang, Yuliana I. Hernandez, Trevor Rose, Jhanelle Gray, John M. Koomen, Anders Berglund, James J. Mulé, Joseph Markowitz
Published 2020-11-01

Activity-Based Proteomics Reveals Heterogeneous Kinome and ATP-Binding Proteome Responses to MEK Inhibition in KRAS Mutant Lung Cancer

by Jae-Young Kim, Paul A. Stewart, Adam L. Borne, Bin Fang, Eric A. Welsh, Yian Ann Chen, Steven A. Eschrich, John M. Koomen, Eric B. Haura
Published 2016-04-01

A Pilot Proteogenomic Study with Data Integration Identifies MCT1 and GLUT1 as Prognostic Markers in Lung Adenocarcinoma.

by Paul A Stewart, Katja Parapatics, Eric A Welsh, André C Müller, Haoyun Cao, Bin Fang, John M Koomen, Steven A Eschrich, Keiryn L Bennett, Eric B Haura
Published 2015-01-01

Drepmel—A Multi-Omics Melanoma Drug Repurposing Resource for Prioritizing Drug Combinations and Understanding Tumor Microenvironment

by Zachary J. Thompson, Jamie K. Teer, Jiannong Li, Zhihua Chen, Eric A. Welsh, Yonghong Zhang, Noura Ayoubi, Zeynep Eroglu, Aik Choon Tan, Keiran S. M. Smalley, Yian Ann Chen
Published 2022-09-01

Metabolomics of primary cutaneous melanoma and matched adjacent extratumoral microenvironment.

by Nicholas J Taylor, Irina Gaynanova, Steven A Eschrich, Eric A Welsh, Timothy J Garrett, Chris Beecher, Ritin Sharma, John M Koomen, Keiran S M Smalley, Jane L Messina, Peter A Kanetsky
Published 2020-01-01

Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142.

by Jana Stöckel, Jon M Jacobs, Thanura R Elvitigala, Michelle Liberton, Eric A Welsh, Ashoka D Polpitiya, Marina A Gritsenko, Carrie D Nicora, David W Koppenaal, Richard D Smith, Himadri B Pakrasi
Published 2011-01-01

Genomic identification of sarcoma radiosensitivity and the clinical implications for radiation dose personalization

by George Yang, Zhigang Yuan, Kamran Ahmed, Eric A. Welsh, William J. Fulp, Ricardo J. Gonzalez, John E. Mullinax, Douglas Letson, Marilyn Bui, Louis B. Harrison, Jacob G. Scott, Javier F. Torres-Roca, Arash O. Naghavi
Published 2021-10-01

Proteogenomic landscape of squamous cell lung cancer

by Paul A. Stewart, Eric A. Welsh, Robbert J. C. Slebos, Bin Fang, Victoria Izumi, Matthew Chambers, Guolin Zhang, Ling Cen, Fredrik Pettersson, Yonghong Zhang, Zhihua Chen, Chia-Ho Cheng, Ram Thapa, Zachary Thompson, Katherine M. Fellows, Jewel M. Francis, James J. Saller, Tania Mesa, Chaomei Zhang, Sean Yoder, Gina M. DeNicola, Amer A. Beg, Theresa A. Boyle, Jamie K. Teer, Yian Ann Chen, John M. Koomen, Steven A. Eschrich, Eric B. Haura
Published 2019-08-01

Plasma cell dependence on histone/protein deacetylase 11 reveals a therapeutic target in multiple myeloma

by AGM Mostofa, Allison Distler, Mark B. Meads, Eva Sahakian, John J. Powers, Alexandra Achille, David Noyes, Gabriela Wright, Bin Fang, Victoria Izumi, John Koomen, Rupal Rampakrishnan, Tuan P. Nguyen, Gabriel De Avila, Ariosto S. Silva, Praneeth Sudalagunta, Rafael Renatino Canevarolo, Maria D. Coelho Siqueira Silva, Raghunandan Reddy Alugubelli, Hongyue A. Dai, Amit Kulkarni, William S. Dalton, Oliver A. Hampton, Eric A. Welsh, Jamie K. Teer, Alexandre Tungesvik, Kenneth L. Wright, Javier Pinilla-Ibarz, Eduardo M. Sotomayor, Kenneth H. Shain, Jason Brayer
Published 2021-12-01