Hepatitis B virus serum RNA transcript isoform composition and proportion in chronic hepatitis B patients by nanopore long-read sequencing

by Alicia Vachon, Alicia Vachon, Grace E. Seo, Grace E. Seo, Nishi H. Patel, Carla S. Coffin, Eric Marinier, Eduardo Eyras, Eduardo Eyras, Eduardo Eyras, Eduardo Eyras, Carla Osiowy, Carla Osiowy
Published 2023-08-01

A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing.

by Isaac Kremsky, Nicolás Bellora, Eduardo Eyras
Published 2015-01-01

The Functional Impact of Alternative Splicing in Cancer

by Héctor Climente-González, Eduard Porta-Pardo, Adam Godzik, Eduardo Eyras
Published 2017-08-01

Genome-wide association between branch point properties and alternative splicing.

by André Corvelo, Martina Hallegger, Christopher W J Smith, Eduardo Eyras
Published 2010-11-01

The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.

by Nurit Gal-Mark, Schraga Schwartz, Oren Ram, Eduardo Eyras, Gil Ast
Published 2009-11-01

Ribosome profiling at isoform level reveals evolutionary conserved impacts of differential splicing on the proteome

by Marina Reixachs-Solé, Jorge Ruiz-Orera, M. Mar Albà, Eduardo Eyras
Published 2020-04-01

The translational landscape of the splicing factor SRSF1 and its role in mitosis

by Magdalena M Maslon, Sara R Heras, Nicolas Bellora, Eduardo Eyras, Javier F Cáceres
Published 2014-05-01

PACIFIC: a lightweight deep-learning classifier of SARS-CoV-2 and co-infecting RNA viruses

by Pablo Acera Mateos, Renzo F. Balboa, Simon Easteal, Eduardo Eyras, Hardip R. Patel
Published 2021-02-01

ReorientExpress: reference-free orientation of nanopore cDNA reads with deep learning

by Angel Ruiz-Reche, Akanksha Srivastava, Joel A. Indi, Ivan de la Rubia, Eduardo Eyras
Published 2019-11-01

Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing

by Zaka Wing-Sze Yuen, Akanksha Srivastava, Runa Daniel, Dennis McNevin, Cameron Jack, Eduardo Eyras
Published 2021-06-01

Regulation of FAS Exon Definition and Apoptosis by the Ewing Sarcoma Protein

by Maria Paola Paronetto, Isabella Bernardis, Elisabetta Volpe, Elias Bechara, Endre Sebestyén, Eduardo Eyras, Juan Valcárcel
Published 2014-05-01

Drosha Regulates Gene Expression Independently of RNA Cleavage Function

by Natalia Gromak, Martin Dienstbier, Sara Macias, Mireya Plass, Eduardo Eyras, Javier F. Cáceres, Nicholas J. Proudfoot
Published 2013-12-01

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER

by Alexandra Sneddon, Agin Ravindran, Somasundhari Shanmuganandam, Madhu Kanchi, Nadine Hein, Simon Jiang, Nikolay Shirokikh, Eduardo Eyras
Published 2024-05-01

Drosha Regulates Gene Expression Independently of RNA Cleavage Function

by Natalia Gromak, Martin Dienstbier, Sara Macias, Mireya Plass, Eduardo Eyras, Javier F. Cáceres, Nicholas J. Proudfoot
Published 2014-06-01

SUPPA2: fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

by Juan L. Trincado, Juan C. Entizne, Gerald Hysenaj, Babita Singh, Miha Skalic, David J. Elliott, Eduardo Eyras
Published 2018-03-01

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data.

by Ivan Dotu, Scott I Adamson, Benjamin Coleman, Cyril Fournier, Emma Ricart-Altimiras, Eduardo Eyras, Jeffrey H Chuang
Published 2018-03-01

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer.

by Juan L Trincado, Marina Reixachs-Solé, Judith Pérez-Granado, Tim Fugmann, Ferran Sanz, Jun Yokota, Eduardo Eyras
Published 2021-09-01

RATTLE: reference-free reconstruction and quantification of transcriptomes from Nanopore sequencing

by Ivan de la Rubia, Akanksha Srivastava, Wenjing Xue, Joel A. Indi, Silvia Carbonell-Sala, Julien Lagarde, M. Mar Albà, Eduardo Eyras
Published 2022-07-01

Formation of an invasion-permissive matrix requires TGFβ/SNAIL1-regulated alternative splicing of fibronectin

by Héctor Franco-Valls, Elsa Tusquets-Uxó, Laura Sala, Maria Val, Raúl Peña, Alessandra Iaconcig, Álvaro Villarino, Martín Jiménez-Arriola, Pere Massó, Juan L. Trincado, Eduardo Eyras, Andrés F. Muro, Jorge Otero, Antonio García de Herreros, Josep Baulida
Published 2023-11-01

Cannabinoid signaling modulation through JZL184 restores key phenotypes of a mouse model for Williams–Beuren syndrome

by Alba Navarro-Romero, Lorena Galera-López, Paula Ortiz-Romero, Alberto Llorente-Ovejero, Lucía de los Reyes-Ramírez, Iker Bengoetxea de Tena, Anna Garcia-Elias, Aleksandra Mas-Stachurska, Marina Reixachs-Solé, Antoni Pastor, Rafael de la Torre, Rafael Maldonado, Begoña Benito, Eduardo Eyras, Rafael Rodríguez-Puertas, Victoria Campuzano, Andres Ozaita
Published 2022-10-01