Beyond Genes: Re-Identifiability of Proteomic Data and Its Implications for Personalized Medicine

by Kurt Boonen, Kristien Hens, Gerben Menschaert, Geert Baggerman, Dirk Valkenborg, Gokhan Ertaylan
Published 2019-09-01

A Compositional Model to Predict the Aggregated Isotope Distribution for Average DNA and RNA Oligonucleotides

by Annelies Agten, Piotr Prostko, Melvin Geubbelmans, Youzhong Liu, Thomas De Vijlder, Dirk Valkenborg
Published 2021-06-01

R Shiny App for the Automated Deconvolution of NMR Spectra to Quantify the Solid-State Forms of Pharmaceutical Mixtures

by Piotr Prostko, Jeroen Pikkemaat, Philipp Selter, Michail Lukaschek, Rainer Wechselberger, Tatsiana Khamiakova, Dirk Valkenborg
Published 2022-12-01

Determination of variation parameters as a crucial step in designing TMT-based clinical proteomics experiments.

by Evelyne Maes, Dirk Valkenborg, Geert Baggerman, Hanny Willems, Bart Landuyt, Liliane Schoofs, Inge Mertens
Published 2015-01-01

Machine learning analysis of motor evoked potential time series to predict disability progression in multiple sclerosis

by Jan Yperman, Thijs Becker, Dirk Valkenborg, Veronica Popescu, Niels Hellings, Bart Van Wijmeersch, Liesbet M. Peeters
Published 2020-03-01

Classification with a Deferral Option and Low-Trust Filtering for Automated Seizure Detection

by Thijs Becker, Kaat Vandecasteele, Christos Chatzichristos, Wim Van Paesschen, Dirk Valkenborg, Sabine Van Huffel, Maarten De Vos
Published 2021-02-01

Thermodynamic framework to assess low abundance DNA mutation detection by hybridization.

by Hanny Willems, An Jacobs, Wahyu Wijaya Hadiwikarta, Tom Venken, Dirk Valkenborg, Nadine Van Roy, Jo Vandesompele, Jef Hooyberghs
Published 2017-01-01

MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra.

by Youzhong Liu, Aida Mrzic, Pieter Meysman, Thomas De Vijlder, Edwin P Romijn, Dirk Valkenborg, Wout Bittremieux, Kris Laukens
Published 2020-01-01

Towards automated discrimination of lipids versus peptides from full scan mass spectra

by Piotr Dittwald, Trung Nghia Vu, Glenn A. Harris, Richard M. Caprioli, Raf Van de Plas, Kris Laukens, Anna Gambin, Dirk Valkenborg
Published 2014-09-01

Urinary Protein Biomarker Panel for the Diagnosis of Antibody-Mediated Rejection in Kidney Transplant Recipients

by Inge Mertens, Hanny Willems, Elisabet Van Loon, Karin Schildermans, Kurt Boonen, Geert Baggerman, Dirk Valkenborg, Wilfried Gwinner, Dany Anglicheau, Marie Essig, Pierre Marquet, Maarten Naesens
Published 2020-09-01

NMR-Metabolomics Reveals a Metabolic Shift after Surgical Resection of Non-Small Cell Lung Cancer

by Elien Derveaux, Melvin Geubbelmans, Maarten Criel, Ingel Demedts, Ulrike Himpe, Kurt Tournoy, Piet Vercauter, Erik Johansson, Dirk Valkenborg, Karolien Vanhove, Liesbet Mesotten, Peter Adriaensens, Michiel Thomeer
Published 2023-04-01

Towards Building a Quantitative Proteomics Toolbox in Precision Medicine: A Mini-Review

by Alejandro Correa Rojo, Alejandro Correa Rojo, Dries Heylen, Dries Heylen, Jan Aerts, Olivier Thas, Olivier Thas, Olivier Thas, Jef Hooyberghs, Jef Hooyberghs, Gökhan Ertaylan, Dirk Valkenborg
Published 2021-08-01

Four layer multi-omics reveals molecular responses to aneuploidy in Leishmania.

by Bart Cuypers, Pieter Meysman, Ionas Erb, Wout Bittremieux, Dirk Valkenborg, Geert Baggerman, Inge Mertens, Shyam Sundar, Basudha Khanal, Cedric Notredame, Jean-Claude Dujardin, Malgorzata A Domagalska, Kris Laukens
Published 2022-09-01

A prospective observational cohort study to identify inflammatory biomarkers for the diagnosis and prognosis of patients with sepsis

by Valentino D’Onofrio, Dries Heylen, Murih Pusparum, Inge Grondman, Johan Vanwalleghem, Agnes Meersman, Reinoud Cartuyvels, Peter Messiaen, Leo A. B. Joosten, Mihai G. Netea, Dirk Valkenborg, Gökhan Ertaylan, Inge C. Gyssens
Published 2022-03-01

Deciphering the Morphology of Motor Evoked Potentials

by Jan Yperman, Jan Yperman, Jan Yperman, Thijs Becker, Thijs Becker, Dirk Valkenborg, Niels Hellings, Melissa Cambron, Melissa Cambron, Dominique Dive, Guy Laureys, Veronica Popescu, Veronica Popescu, Bart Van Wijmeersch, Bart Van Wijmeersch, Liesbet M. Peeters, Liesbet M. Peeters
Published 2020-07-01

A community proposal to integrate proteomics activities in ELIXIR [version 1; referees: 2 approved]

by Juan Antonio Vizcaíno, Mathias Walzer, Rafael C. Jiménez, Wout Bittremieux, David Bouyssié, Christine Carapito, Fernando Corrales, Myriam Ferro, Albert J.R. Heck, Peter Horvatovich, Martin Hubalek, Lydie Lane, Kris Laukens, Fredrik Levander, Frederique Lisacek, Petr Novak, Magnus Palmblad, Damiano Piovesan, Alfred Pühler, Veit Schwämmle, Dirk Valkenborg, Merlijn van Rijswijk, Jiri Vondrasek, Martin Eisenacher, Lennart Martens, Oliver Kohlbacher
Published 2017-06-01