Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis

by Damien Arnol, Denis Schapiro, Bernd Bodenmiller, Julio Saez-Rodriguez, Oliver Stegle
Published 2019-10-01

Explainable multiview framework for dissecting spatial relationships from highly multiplexed data

by Jovan Tanevski, Ricardo Omar Ramirez Flores, Attila Gabor, Denis Schapiro, Julio Saez-Rodriguez
Published 2022-04-01

Laser Ablation ICP-MS for Single-Cell-based Tissue Imaging

by Gunnar Schwarz, Hao A. O. Wang, Charlotte Giessen, Denis Schapiro, Bodo Hattendorf, Bernd Bodenmiller, Detlef Günther
Published 2015-10-01

High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia

by Fanny A. Pelissier Vatter, Denis Schapiro, Hang Chang, Alexander D. Borowsky, Jonathan K. Lee, Bahram Parvin, Martha R. Stampfer, Mark A. LaBarge, Bernd Bodenmiller, James B. Lorens
Published 2018-04-01

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium

by Sanja Vickovic, Denis Schapiro, Konstantin Carlberg, Britta Lötstedt, Ludvig Larsson, Franziska Hildebrandt, Marina Korotkova, Aase H. Hensvold, Anca I. Catrina, Peter K. Sorger, Vivianne Malmström, Aviv Regev, Patrik L. Ståhl
Published 2022-02-01

Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer

by Anniina Färkkilä, Doga C. Gulhan, Julia Casado, Connor A. Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R. Graham, Bruce J. Dezube, Pamela Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I. Shapiro, Ursula A. Matulonis, Peter J. Park, Sampsa Hautaniemi, Peter K. Sorger, Elizabeth M. Swisher, Alan D. D’Andrea, Panagiotis A. Konstantinopoulos
Published 2020-03-01

Author Correction: Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer

by Anniina Färkkilä, Doga C. Gulhan, Julia Casado, Connor A. Jacobson, Huy Nguyen, Bose Kochupurakkal, Zoltan Maliga, Clarence Yapp, Yu-An Chen, Denis Schapiro, Yinghui Zhou, Julie R. Graham, Bruce J. Dezube, Pamela Munster, Sandro Santagata, Elizabeth Garcia, Scott Rodig, Ana Lako, Dipanjan Chowdhury, Geoffrey I. Shapiro, Ursula A. Matulonis, Peter J. Park, Sampsa Hautaniemi, Peter K. Sorger, Elizabeth M. Swisher, Alan D. D’Andrea, Panagiotis A. Konstantinopoulos
Published 2020-05-01