PTMphinder: an R package for PTM site localization and motif extraction from proteomic datasets

by Jacob M. Wozniak, David J. Gonzalez
Published 2019-06-01

The S Protein of Group B Streptococcus Is a Critical Virulence Determinant That Impacts the Cell Surface Virulome

by Anaamika Campeau, Anaamika Campeau, Anaamika Campeau, Satoshi Uchiyama, Concepcion Sanchez, Concepcion Sanchez, Concepcion Sanchez, Consuelo Sauceda, Consuelo Sauceda, Consuelo Sauceda, Victor Nizet, Victor Nizet, Victor Nizet, David J. Gonzalez, David J. Gonzalez, David J. Gonzalez
Published 2021-10-01

Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis.

by Varahenage R Perera, John D Lapek, Gerald L Newton, David J Gonzalez, Kit Pogliano
Published 2018-01-01

Dissociation of DNA damage sensing by endoglycosidase HPSE

by Alex Agelidis, Rahul K. Suryawanshi, Chandrashekhar D. Patil, Anaamika Campeau, David J. Gonzalez, Deepak Shukla
Published 2021-03-01

Exposure of <i>Mycobacterium abscessus</i> to Environmental Stress and Clinically Used Antibiotics Reveals Common Proteome Response among Pathogenic Mycobacteria

by Rajoana Rojony, Lia Danelishvili, Anaamika Campeau, Jacob M. Wozniak, David J. Gonzalez, Luiz E. Bermudez
Published 2020-05-01

Location-specific signatures of Crohn’s disease at a multi-omics scale

by Carlos G. Gonzalez, Robert H. Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S. Dulai, David J. Gonzalez
Published 2022-08-01

Stool multi-omics for the study of host–microbe interactions in inflammatory bowel disease

by Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S. Dulai, Rob Knight, David J. Gonzalez, Carlos G. Gonzalez
Published 2022-12-01

Functional and Proteomic Analysis of Streptococcus pyogenes Virulence Upon Loss of Its Native Cas9 Nuclease

by Nina J. Gao, Nina J. Gao, Mahmoud M. Al-Bassam, Saugat Poudel, Saugat Poudel, Saugat Poudel, Jacob M. Wozniak, Jacob M. Wozniak, David J. Gonzalez, David J. Gonzalez, Joshua Olson, Karsten Zengler, Karsten Zengler, Victor Nizet, Victor Nizet, J. Andrés Valderrama
Published 2019-08-01

A Cdk4/6-dependent phosphorylation gradient regulates the early to late G1 phase transition

by Manuel Kaulich, Verena M. Link, John D. Lapek, Yeon J. Lee, Christopher K. Glass, David J. Gonzalez, Steven F. Dowdy
Published 2021-07-01

Fermentable fiber-induced hepatocellular carcinoma in mice recapitulates gene signatures found in human liver cancer.

by Darshan Shimoga Chandrashekar, Rachel M Golonka, Beng San Yeoh, David J Gonzalez, Mathias Heikenwälder, Andrew T Gerwirtz, Sooryanarayana Varambally, Matam Vijay-Kumar
Published 2020-01-01

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease

by Robert H. Mills, Yoshiki Vázquez-Baeza, Qiyun Zhu, Lingjing Jiang, James Gaffney, Greg Humphrey, Larry Smarr, Rob Knight, David J. Gonzalez
Published 2019-02-01

Optimization of carbon and energy utilization through differential translational efficiency

by Mahmoud M. Al-Bassam, Ji-Nu Kim, Livia S. Zaramela, Benjamin P. Kellman, Cristal Zuniga, Jacob M. Wozniak, David J. Gonzalez, Karsten Zengler
Published 2018-10-01

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

by Arjun Patel, Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V. Sastry, Svetlana Maurya, Kevin Rychel, David J. Gonzalez, Bernhard O. Palsson
Published 2024-06-01

Molecular dissection of Chagas induced cardiomyopathy reveals central disease associated and druggable signaling pathways.

by Jacob M Wozniak, Tatiana Araújo Silva, Diane Thomas, Jair L Siqueira-Neto, James H McKerrow, David J Gonzalez, Claudia M Calvet
Published 2020-05-01

Unique virulence role of post-translocational chaperone PrsA in shaping Streptococcus pyogenes secretome

by Zhao-Yi Wu, Anaamika Campeau, Chao-Hsien Liu, David J. Gonzalez, Masaya Yamaguchi, Shigetada Kawabata, Chieh-Hsien Lu, Chian-Yu Lai, Hao-Chieh Chiu, Yung-Chi Chang
Published 2021-12-01

A Tyrosine Switch on NEDD4-2 E3 Ligase Transmits GPCR Inflammatory Signaling

by Neil J. Grimsey, Rachan Narala, Cara C. Rada, Sohum Mehta, Bryan S. Stephens, Irina Kufareva, John Lapek, David J. Gonzalez, Tracy M. Handel, Jin Zhang, JoAnn Trejo
Published 2018-09-01

Enhanced activity of Alzheimer disease-associated variant of protein kinase Cα drives cognitive decline in a mouse model

by Gema Lordén, Jacob M. Wozniak, Kim Doré, Lara E. Dozier, Chelsea Cates-Gatto, Gentry N. Patrick, David J. Gonzalez, Amanda J. Roberts, Rudolph E. Tanzi, Alexandra C. Newton
Published 2022-11-01

Staphylococcus aureus Membrane-Derived Vesicles Promote Bacterial Virulence and Confer Protective Immunity in Murine Infection Models

by Fatemeh Askarian, Fatemeh Askarian, John D. Lapek, Mitesh Dongre, Chih-Ming Tsai, Monika Kumaraswamy, Armin Kousha, Armin Kousha, J. Andrés Valderrama, Judith A. Ludviksen, Jorunn P. Cavanagh, Jorunn P. Cavanagh, Satoshi Uchiyama, Tom E. Mollnes, Tom E. Mollnes, Tom E. Mollnes, Tom E. Mollnes, Tom E. Mollnes, David J. Gonzalez, David J. Gonzalez, Sun N. Wai, Victor Nizet, Victor Nizet, Mona Johannessen
Published 2018-02-01

Evaluating Organism-Wide Changes in the Metabolome and Microbiome following a Single Dose of Antibiotic

by Alison Vrbanac, Kathryn A. Patras, Alan K. Jarmusch, Robert H. Mills, Samuel R. Shing, Robert A. Quinn, Fernando Vargas, David J. Gonzalez, Pieter C. Dorrestein, Rob Knight, Victor Nizet
Published 2020-10-01

A Hetero-Multimeric Chitinase-Containing Plasmodium falciparum and Plasmodium gallinaceum Ookinete-Secreted Protein Complex Involved in Mosquito Midgut Invasion

by Kailash P. Patra, Hargobinder Kaur, Surendra Kumar Kolli, Jacob M. Wozniak, Judith Helena Prieto, Judith Helena Prieto, John R. Yates, David J. Gonzalez, Chris J. Janse, Joseph M. Vinetz
Published 2021-01-01