Adaptive Multiview Nonnegative Matrix Factorization Algorithm for Integration of Multimodal Biomedical Data

by Bisakha Ray, Wenke Liu, David Fenyö
Published 2017-08-01

Proteogenomics unveils mechanistic insights to precision oncology

by Yongchao Dou, Lizabeth Katsnelson, Bing Zhang, David Fenyö, Tao Liu
Published 2023-11-01

Predicting endometrial cancer subtypes and molecular features from histopathology images using multi-resolution deep learning models

by Runyu Hong, Wenke Liu, Deborah DeLair, Narges Razavian, David Fenyö
Published 2021-09-01

Prediction of Maternal Hemorrhage Using Machine Learning: Retrospective Cohort Study

by Jill M Westcott, Francine Hughes, Wenke Liu, Mark Grivainis, Iffath Hoskins, David Fenyo
Published 2022-07-01

Diversity of Functionally Distinct Clonal Sets of Human Conventional Memory B Cells That Bind Staphylococcal Protein A

by Emily E. Radke, Emily E. Radke, Zhi Li, Zhi Li, David N. Hernandez, Hanane El Bannoudi, Sergei L. Kosakovsky Pond, Bo Shopsin, Peter Lopez, David Fenyö, David Fenyö, Gregg J. Silverman
Published 2021-04-01

MED19 encodes two unique protein isoforms that confer prostate cancer growth under low androgen through distinct gene expression programs

by Rachel Ruoff, Hannah Weber, Ying Wang, Hongying Huang, Ellen Shapiro, David Fenyö, Michael J. Garabedian
Published 2023-10-01

GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome

by Matthew D Sekedat, David Fenyö, Richard S Rogers, Alan J Tackett, John D Aitchison, Brian T Chait
Published 2010-01-01

RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs

by Erica M. Briggs, Wilson McKerrow, Paolo Mita, Jef D. Boeke, Susan K. Logan, David Fenyö
Published 2021-02-01

A predictive model for vertebrate bone identification from collagen using proteomic mass spectrometry

by Heyi Yang, Erin R. Butler, Samantha A. Monier, Jennifer Teubl, David Fenyö, Beatrix Ueberheide, Donald Siegel
Published 2021-05-01

Predictive Modeling of Morbidity and Mortality in Patients Hospitalized With COVID-19 and its Clinical Implications: Algorithm Development and Interpretation

by Joshua M Wang, Wenke Liu, Xiaoshan Chen, Michael P McRae, John T McDevitt, David Fenyö
Published 2021-07-01

Few-shot genes selection: subset of PAM50 genes for breast cancer subtypes classification

by Leandro Y. S. Okimoto, Rayol Mendonca-Neto, Fabíola G. Nakamura, Eduardo F. Nakamura, David Fenyö, Claudio T. Silva
Published 2024-03-01

511 Disease flares in lupus are concordant with Ruminococcus Blautia Gnavus blooms arising within unstable gut microbiota communities

by Jill Buyon, Peter Izmirly, Alexander V Alekseyenko, Gregg J Silverman, Doua F Azzouz, Ze Chen, David Fenyo
Published 2021-11-01

USP1-trapping lesions as a source of DNA replication stress and genomic instability

by Kate E. Coleman, Yandong Yin, Sarah Kit Leng Lui, Sarah Keegan, David Fenyo, Duncan J. Smith, Eli Rothenberg, Tony T. Huang
Published 2022-04-01

Spatiotemporal dynamics of homologous recombination repair at single collapsed replication forks

by Donna R. Whelan, Wei Ting C. Lee, Yandong Yin, Dylan M. Ofri, Keria Bermudez-Hernandez, Sarah Keegan, David Fenyo, Eli Rothenberg
Published 2018-09-01

A Complex Systems Approach to Causal Discovery in Psychiatry.

by Glenn N Saxe, Alexander Statnikov, David Fenyo, Jiwen Ren, Zhiguo Li, Meera Prasad, Dennis Wall, Nora Bergman, Ernestine C Briggs, Constantin Aliferis
Published 2016-01-01

UXT is required for spermatogenesis in mice.

by Eric D Schafler, Phillip A Thomas, Susan Ha, Yu Wang, Keria Bermudez-Hernandez, Zuojian Tang, David Fenyö, Margarita Vigodner, Susan K Logan
Published 2018-01-01

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data

by Gerben Menschaert, Xiaojing Wang, Andrew R. Jones, Fawaz Ghali, David Fenyö, Volodimir Olexiouk, Bing Zhang, Eric W. Deutsch, Tobias Ternent, Juan Antonio Vizcaíno
Published 2018-01-01

Simultaneous Quantitative SARS-CoV-2 Antigen and Host Antibody Detection and Pre-Screening Strategy at the Point of Care

by Kritika Srinivasan Rajsri, Michael P. McRae, Nicolaos J. Christodoulides, Isaac Dapkins, Glennon W. Simmons, Hanover Matz, Helen Dooley, David Fenyö, John T. McDevitt
Published 2023-06-01

LINE-1 protein localization and functional dynamics during the cell cycle

by Paolo Mita, Aleksandra Wudzinska, Xiaoji Sun, Joshua Andrade, Shruti Nayak, David J Kahler, Sana Badri, John LaCava, Beatrix Ueberheide, Chi Y Yun, David Fenyö, Jef D Boeke
Published 2018-01-01

Strategy for identifying dendritic cell-processed CD4+ T cell epitopes from the HIV gag p24 protein.

by Leonia Bozzacco, Haiqiang Yu, Jörn Dengjel, Christine Trumpfheller, Henry A Zebroski, Nawei Zhang, Victoria Küttner, Beatrix M Ueberheide, Haiteng Deng, Brian T Chait, Ralph M Steinman, Svetlana Mojsov, David Fenyö
Published 2012-01-01