The rise and fall of breakpoint reuse depending on genome resolution

by Darling Aaron E, Attie Oliver, Yancopoulos Sophia
Published 2011-10-01

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

by Didelot Xavier, Méric Guillaume, Falush Daniel, Darling Aaron E
Published 2012-06-01

Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome.

by Coil, David A, Alexiev, Alexandra, Wallis, Corrin, O'Flynn, Ciaran, Deusch, Oliver, Davis, Ian, Horsfall, Alexander, Kirkwood, Nicola, Jospin, Guillaume, Eisen, Jonathan A, Harris, Stephen, Darling, Aaron E
Published 2015

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

by Didelot, Xavier, Méric, Guillaume, Falush, Daniel, Darling, Aaron E
Published 2012

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

by Risso, Davide, Purvis, Liam, Fletcher, Russell B, Das, Diya, Ngai, John, Dudoit, Sandrine, Purdom, Elizabeth
Published 2018

Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software

by Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Sparholt Jørgensen, Tue, Shapiro, Nicole, Blood, Philip D., Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z., Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hestbjerg Hansen, Lars, Sørensen, Søren J., Chia, Burton K.H., Denis, Bertrand, Froula, Jeff L., Wang, Zhong, Egan, Robert, Don Kang, Dongwan, Cook, Jeffrey J., Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W., Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael D., Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo G.Z., Cuevas, Daniel A., Edwards, Robert A., Saha, Surya, Piro, Vitor C., Renard, Bernhard Y., Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C., Woyke, Tanja, Vorholt, Julia A., Schulze-Lefert, Paul, Rubin, Edward M., Darling, Aaron E., Rattei, Thomas, McHardy, Alice C.
Published 2017

Critical Assessment of Metagenome Interpretation: the second round of challenges

by Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T.L.C., Cristian, Alexandru, Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hestbjerg Hansen, Lars, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Sparholt Jørgensen, Tue, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Korobeynikov, Anton, Kwan, Jason, LaPierre, Nathan, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio; id_orcid0000-0002-7050-2239, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas; id_orcid0000-0003-0771-8309, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim; id_orcid0000-0001-7473-6086, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi; id_orcid0000-0003-3065-0314, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn
Published 2022