fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

by Jiaxing Lin, Alexander Sibley, Ivo Shterev, Andrew Nixon, Federico Innocenti, Cliburn Chan, Kouros Owzar
Published 2019-06-01

FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows

by Scott White, Scott White, Scott White, John Quinn, Jennifer Enzor, Jennifer Enzor, Janet Staats, Janet Staats, Sarah M. Mosier, Sarah M. Mosier, James Almarode, Thomas N. Denny, Thomas N. Denny, Kent J. Weinhold, Kent J. Weinhold, Kent J. Weinhold, Guido Ferrari, Guido Ferrari, Guido Ferrari, Cliburn Chan, Cliburn Chan, Cliburn Chan
Published 2021-11-01

Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering

by Jiyuan Fang, Cliburn Chan, Kouros Owzar, Liuyang Wang, Diyuan Qin, Qi-Jing Li, Jichun Xie
Published 2022-12-01

Epstein-Barr virus evades restrictive host chromatin closure by subverting B cell activation and germinal center regulatory loci

by Elliott D. SoRelle, Nicolás M. Reinoso-Vizcaino, Joanne Dai, Ashley P. Barry, Cliburn Chan, Micah A. Luftig
Published 2023-08-01

Mathematical Modeling of Rhesus Cytomegalovirus Transplacental Transmission in Seronegative Rhesus Macaques

by Yishu Gong, Matilda Moström, Claire Otero, Sarah Valencia, Alice F. Tarantal, Amitinder Kaur, Sallie R. Permar, Cliburn Chan
Published 2023-10-01

Comparative analysis of RNA enrichment methods for preparation of <i>Cryptococcus neoformans</i> RNA sequencing libraries

by Calla L Telzrow, Paul J Zwack, Shannon Esher Righi, Fred S Dietrich, Cliburn Chan, Kouros Owzar, J Andrew Alspaugh, Joshua A Granek
Published 2021-08-01

Establishment of normative ranges of the healthy human immune system with comprehensive polychromatic flow cytometry profiling.

by John S Yi, Marilyn Rosa-Bray, Janet Staats, Pearl Zakroysky, Cliburn Chan, Melissa A Russo, Chelsae Dumbauld, Scott White, Todd Gierman, Kent J Weinhold, Jeffrey T Guptill
Published 2019-01-01

HLA Loci and Recurrence of Focal Segmental Glomerulosclerosis in Pediatric Kidney Transplantation

by Brian I. Shaw, MD, Alejandro Ochoa, PhD, Cliburn Chan, MD, Chloe Nobuhara, BS, Rasheed Gbadegesin, MD, Annette M. Jackson, PhD, Eileen T. Chambers, MD
Published 2021-10-01

Hierarchical modeling for rare event detection and cell subset alignment across flow cytometry samples.

by Andrew Cron, Cécile Gouttefangeas, Jacob Frelinger, Lin Lin, Satwinder K Singh, Cedrik M Britten, Marij J P Welters, Sjoerd H van der Burg, Mike West, Cliburn Chan
Published 2013-01-01

Multivalent cytomegalovirus glycoprotein B nucleoside modified mRNA vaccines did not demonstrate a greater antibody breadth

by Hsuan-Yuan Wang, Leike Li, Cody S. Nelson, Richard Barfield, Sarah Valencia, Cliburn Chan, Hiromi Muramatsu, Paulo J. C. Lin, Norbert Pardi, Zhiqiang An, Drew Weissman, Sallie R. Permar
Published 2024-02-01

Immunomodulatory lipid mediator profiling of cerebrospinal fluid following surgery in older adults

by Niccolò Terrando, John J. Park, Michael Devinney, Cliburn Chan, Mary Cooter, Pallavi Avasarala, Joseph P. Mathew, Quintin J. Quinones, Krishna Rao Maddipati, Miles Berger, for the MADCO-PC Study Team
Published 2021-02-01

Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host–pathogen dynamics in lymphoblastoid cell lines

by Elliott D SoRelle, Joanne Dai, Emmanuela N Bonglack, Emma M Heckenberg, Jeffrey Y Zhou, Stephanie N Giamberardino, Jeffrey A Bailey, Simon G Gregory, Cliburn Chan, Micah A Luftig
Published 2021-01-01

Managing Multi-center Flow Cytometry Data for Immune Monitoring

by Scott White, Karoline Laske, Marij J.P. Welters, Nicole Bidmon, Sjoerd H. van der Burg, Cedrik M. Britten, Jennifer Enzor, Janet Staats, Kent J. Weinhold, Cécile Gouttefangeas, Cliburn Chan
Published 2015-06-01

Correction: Single-cell RNA-seq reveals transcriptomic heterogeneity mediated by host–pathogen dynamics in lymphoblastoid cell lines

by Elliott D SoRelle, Joanne Dai, Emmanuela N Bonglack, Emma M Heckenberg, Jeffrey Y Zhou, Stephanie N Giamberardino, Jeffrey A Bailey, Simon G Gregory, Cliburn Chan, Micah A Luftig
Published 2021-11-01

Nasal Immunization With Small Molecule Mast Cell Activators Enhance Immunity to Co-Administered Subunit Immunogens

by Brandi T. Johnson-Weaver, Hae Woong Choi, Hang Yang, Josh A. Granek, Cliburn Chan, Soman N. Abraham, Soman N. Abraham, Soman N. Abraham, Herman F. Staats, Herman F. Staats, Herman F. Staats
Published 2021-09-01

Managing Multi-center Flow Cytometry Data for Immune Monitoring

by Scott White, Karoline Laske, Marij J.P. Welters, Nicole Bidmon, Sjoerd H. Van Der Burg, Cedrik M. Britten, Jennifer Enzor, Janet Staats, Kent J. Weinhold, Cέcile Gouttefangeas, Cliburn Chan
Published 2014-01-01

Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images

by Anna Maria Masci, Scott White, Ben Neely, Maryanne Ardini-Polaske, Carol B. Hill, Ravi S. Misra, Bruce Aronow, Nathan Gaddis, Lina Yang, Susan E. Wert, Scott M. Palmer, Cliburn Chan, LungMAP Consortium
Published 2021-02-01

Biomarkers detected in cord blood predict vaccine responses in young infants

by Carolyn H. Baloh, Guglielmo M. Venturi, Bernard M. Fischer, Liane S. Sadder, Julie J. Kim-Chang, Cliburn Chan, Kristina De Paris, Kristina De Paris, Li Yin, Grace M. Aldrovandi, Maureen M. Goodenow, John W. Sleasman
Published 2023-05-01

Automated Analysis of Flow Cytometry Data to Reduce Inter-Lab Variation in the Detection of Major Histocompatibility Complex Multimer-Binding T Cells

by Natasja Wulff Pedersen, P. Anoop Chandran, Yu Qian, Jonathan Rebhahn, Nadia Viborg Petersen, Mathilde Dalsgaard Hoff, Scott White, Alexandra J. Lee, Rick Stanton, Charlotte Halgreen, Kivin Jakobsen, Tim Mosmann, Cécile Gouttefangeas, Cliburn Chan, Richard H. Scheuermann, Richard H. Scheuermann, Sine Reker Hadrup
Published 2017-07-01

HIV envelope antigen valency on peptide nanofibers modulates antibody magnitude and binding breadth

by Chelsea N. Fries, Jui-Lin Chen, Maria L. Dennis, Nicole L. Votaw, Joshua Eudailey, Brian E. Watts, Kelly M. Hainline, Derek W. Cain, Richard Barfield, Cliburn Chan, M. Anthony Moody, Barton F. Haynes, Kevin O. Saunders, Sallie R. Permar, Genevieve G. Fouda, Joel H. Collier
Published 2021-07-01