Prediction of plant lncRNA by ensemble machine learning classifiers

by Caitlin M. A. Simopoulos, Elizabeth A. Weretilnyk, G. Brian Golding
Published 2018-05-01

Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships

by Caitlin M. A. Simopoulos, Elizabeth A. Weretilnyk, G. Brian Golding
Published 2019-08-01

iMetaLab Suite: A one‐stop toolset for metaproteomics

by Leyuan Li, Zhibin Ning, Kai Cheng, Xu Zhang, Caitlin M. A. Simopoulos, Daniel Figeys
Published 2022-06-01

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

by Caitlin M. A. Simopoulos, Zhibin Ning, Leyuan Li, Mona M. Khamis, Xu Zhang, Mathieu Lavallée-Adam, Daniel Figeys
Published 2022-08-01

Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit s...

by Caitlin M. A. Simopoulos, Mitchell J. R. MacLeod, Solmaz Irani, Wilson W. L. Sung, Marc J. Champigny, Peter S. Summers, G. Brian Golding, Elizabeth A. Weretilnyk
Published 2020-06-01

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

by Leyuan Li, Tong Wang, Zhibin Ning, Xu Zhang, James Butcher, Joeselle M. Serrana, Caitlin M. A. Simopoulos, Janice Mayne, Alain Stintzi, David R. Mack, Yang-Yu Liu, Daniel Figeys
Published 2023-06-01