Comprehensive population-based genome sequencing provides insight into hematopoietic regulatory mechanisms

by Guo, Michael H., Nandakumar, Satish K., Ulirsch, Jacob C., Buenrostro, Jason D., Natarajan, Pradeep, Salem, Rany M., Chiarle, Roberto, Mitt, Mario, Kals, Mart, Pärn, Kalle, Fischer, Krista, Milani, Lili, Mägi, Reedik, Palta, Priit, Metspalu, Andres, Esko, Tõnu, Zekavat, Seyedeh M., Gabriel, Stacey, Lander, Eric Steven, Kathiresan, Sekar, Sankaran, Vijay G., Hirschhorn, Joel N.
Published 2017

chromVAR: Inferring transcription factor-associated accessibility from single-cell epigenomic data

by Schep, Alicia N., Wu, Beijing, Buenrostro, Jason D., Greenleaf, William J.
Published 2018

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

by LaFave, Lindsay M, Kartha, Vinay K, Ma, Sai, Meli, Kevin, Del Priore, Isabella, Lareau, Caleb, Naranjo, Santiago, Westcott, Peter MK, Duarte, Fabiana M, Sankar, Venkat, Chiang, Zachary, Brack, Alison, Law, Travis, Hauck, Haley, Okimoto, Annalisa, Regev, Aviv, Buenrostro, Jason D, Jacks, Tyler
Published 2021

Advances in Chromatin and Chromosome Research: Perspectives from Multiple Fields

by Agbleke, Andrews Akwasi, Amitai, Assaf, Buenrostro, Jason D, Chakrabarti, Aditi, Chu, Lingluo, Hansen, Anders S, Koenig, Kristen M, Labade, Ajay S, Liu, Sirui, Nozaki, Tadasu, Ovchinnikov, Sergey, Seeber, Andrew, Shaban, Haitham A, Spille, Jan-Hendrik, Stephens, Andrew D, Su, Jun-Han, Wadduwage, Dushan
Published 2021

In situ genome sequencing resolves DNA sequence and structure in intact biological samples

by Payne, Andrew C, Chiang, Zachary D, Reginato, Paul L, Mangiameli, Sarah M, Murray, Evan M, Yao, Chun-Chen, Markoulaki, Styliani, Earl, Andrew S, Labade, Ajay S, Jaenisch, Rudolf, Church, George M, Boyden, Edward S, Buenrostro, Jason D, Chen, Fei
Published 2021

Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma

by LaFave, Lindsay M., Kartha, Vinay K., Ma, Sai, Meli, Kevin, Del Priore, Isabella, Lareau, Caleb, Naranjo, Santiago, Westcott, Peter M.K., Duarte, Fabiana M., Sankar, Venkat, Chiang, Zachary, Brack, Alison, Law, Travis, Hauck, Haley, Okimoto, Annalisa, Regev, Aviv, Buenrostro, Jason D., Jacks, Tyler
Published 2022

In situ genome sequencing resolves DNA sequence and structure in intact biological samples

by Payne, Andrew C, Chiang, Zachary D, Reginato, Paul L, Mangiameli, Sarah M, Murray, Evan M, Yao, Chun-Chen, Markoulaki, Styliani, Earl, Andrew S, Labade, Ajay S, Jaenisch, Rudolf, Church, George M, Boyden, Edward S, Buenrostro, Jason D, Chen, Fei
Published 2022

TOP2 synergizes with BAF chromatin remodeling for both resolution and formation of facultative heterochromatin

by Miller, Erik L., Hargreaves, Diana C., Kadoch, Cigall, Chang, Chiung-Ying, Calarco, Joseph P., Hodges, Courtney, Buenrostro, Jason D., Cui, Kairong, Greenleaf, William J., Zhao, Keji, Crabtree, Gerald R.
Published 2017

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling

by Lareau, Caleb A, Ludwig, Leif S, Muus, Christoph, Gohil, Satyen H, Zhao, Tongtong, Chiang, Zachary, Pelka, Karin, Verboon, Jeffrey M, Luo, Wendy, Christian, Elena, Rosebrock, Daniel, Getz, Gad, Boland, Genevieve M, Chen, Fei, Buenrostro, Jason D, Hacohen, Nir, Wu, Catherine J, Aryee, Martin J, Regev, Aviv, Sankaran, Vijay G
Published 2021

Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin

by Ma, Sai, Zhang, Bing, LaFave, Lindsay M, Earl, Andrew S, Chiang, Zachary, Hu, Yan, Ding, Jiarui, Brack, Alison, Kartha, Vinay K, Tay, Tristan, Law, Travis, Lareau, Caleb, Hsu, Ya-Chieh, Regev, Aviv, Buenrostro, Jason D
Published 2021

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types.

by Finucane, Hilary K, Reshef, Yakir A, Anttila, Verneri, Slowikowski, Kamil, Gusev, Alexander, Byrnes, Andrea, Gazal, Steven, Loh, Po-Ru, Lareau, Caleb, Shoresh, Noam, Genovese, Giulio, Saunders, Arpiar, Macosko, Evan, Pollack, Samuela, Brainstorm Consortium, Perry, John RB, Buenrostro, Jason D, Bernstein, Bradley E, Raychaudhuri, Soumya, McCarroll, Steven, Neale, Benjamin M, Price, Alkes L
Published 2018

Single-cell epigenomic variability reveals functional cancer heterogeneity

by Litzenburger, Ulrike M., Buenrostro, Jason D., Wu, Beijing, Shen, Ying, Sheffield, Nathan C., Kathiria, Arwa, Greenleaf, William J., Chang, Howard Y.
Published 2017

Hyperactivation of sympathetic nerves drives depletion of melanocyte stem cells

by Zhang, Bing, Ma, Sai, Rachmin, Inbal, He, Megan, Baral, Pankaj, Choi, Sekyu, Gonçalves, William A., Shwartz, Yulia, Fast, Eva M., Su, Yiqun, Zon, Leonard I., Regev, Aviv, Buenrostro, Jason D., Cunha, Thiago M., Chiu, Isaac M., Fisher, David E., Hsu, Ya-Chieh
Published 2020

Scalable Approaches for Inferring Chromatin States and Lineages of Human Cells

by Lareau, Caleb Andrew
Published 2020

PHF6 regulates phenotypic plasticity through chromatin organization within lineage-specific genes

by Weintraub, Abraham S., Buenrostro, Jason D., Cheng, Christine S., Regev, Aviv, Young, Richard A., Soto Feliciano, Yadira M., Bartlebaugh, Jordan M. E., Sanchez-Rivera, Francisco Javier, Bhutkar, Arjun, Jacks, Tyler E., Hemann, Michael, Liu, Yunpeng,S.M.Massachusetts Institute of Technology.
Published 2018