The miRNA Expression Profile of Experimental Autoimmune Encephalomyelitis Reveals Novel Potential Disease Biomarkers

by Shivaprasad H. Venkatesha, Steven Dudics, Yang Song, Anup Mahurkar, Kamal D. Moudgil
Published 2018-12-01

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 2; peer review: 3 approved]

by Justin Wagner, Jayaram Kancherla, Domenick Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Published 2021-06-01

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz [version 1; peer review: 2 approved]

by Justin Wagner, Jayaram Kancherla, Domenick Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Published 2020-06-01

A comparative analysis of library prep approaches for sequencing low input translatome samples

by Yang Song, Beatrice Milon, Sandra Ott, Xuechu Zhao, Lisa Sadzewicz, Amol Shetty, Erich T. Boger, Luke J. Tallon, Robert J. Morell, Anup Mahurkar, Ronna Hertzano
Published 2018-09-01

Best practices on the differential expression analysis of multi-species RNA-seq

by Matthew Chung, Vincent M. Bruno, David A. Rasko, Christina A. Cuomo, José F. Muñoz, Jonathan Livny, Amol C. Shetty, Anup Mahurkar, Julie C. Dunning Hotopp
Published 2021-04-01

Peripheral blood transcriptomic profiling of molecular mechanisms commonly regulated by binge drinking and placebo effects

by Amol Carl Shetty, John Sivinski, Jessica Cornell, Carrie McCracken, Lisa Sadzewicz, Anup Mahurkar, Xing-Qun Wang, Luana Colloca, Weihong Lin, Nageswara Pilli, Maureen A. Kane, Chamindi Seneviratne
Published 2024-05-01

CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline

by Sonia Agrawal, Cesar Arze, Ricky S. Adkins, Jonathan Crabtree, David Riley, Mahesh Vangala, Kevin Galens, Claire M. Fraser, Hervé Tettelin, Owen White, Samuel V. Angiuoli, Anup Mahurkar, W. Florian Fricke
Published 2017-04-01

FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses

by Matthew Chung, Ricky S. Adkins, John S. A. Mattick, Katie R. Bradwell, Amol C. Shetty, Lisa Sadzewicz, Luke J. Tallon, Claire M. Fraser, David A. Rasko, Anup Mahurkar, Julie C. Dunning Hotopp
Published 2021-02-01

Cardiomyocyte-specific perilipin 5 overexpression leads to myocardial steatosis and modest cardiac dysfunction1[S]

by Hong Wang, Urmila Sreenivasan, Da-Wei Gong, Kelly A. O'Connell, Erinne R. Dabkowski, Peter A. Hecker, Nicoleta Ionica, Manige Konig, Anup Mahurkar, Yezhou Sun, William C. Stanley, Carole Sztalryd
Published 2013-04-01

Drug Repurposing of Bromodomain Inhibitors as Potential Novel Therapeutic Leads for Lymphatic Filariasis Guided by Multispecies Transcriptomics

by Matthew Chung, Laura E. Teigen, Silvia Libro, Robin E. Bromley, Dustin Olley, Nikhil Kumar, Lisa Sadzewicz, Luke J. Tallon, Anup Mahurkar, Jeremy M. Foster, Michelle L. Michalski, Julie C. Dunning Hotopp
Published 2019-12-01

Functional Dynamics of the Gut Microbiome in Elderly People during Probiotic Consumption

by Emiley A. Eloe-Fadrosh, Arthur Brady, Jonathan Crabtree, Elliott F. Drabek, Bing Ma, Anup Mahurkar, Jacques Ravel, Miriam Haverkamp, Anne-Maria Fiorino, Christine Botelho, Irina Andreyeva, Patricia L. Hibberd, Claire M. Fraser
Published 2015-05-01

Simultaneous transcriptional profiling of bacteria and their host cells.

by Michael S Humphrys, Todd Creasy, Yezhou Sun, Amol C Shetty, Marcus C Chibucos, Elliott F Drabek, Claire M Fraser, Umar Farooq, Naomi Sengamalay, Sandy Ott, Huizhong Shou, Patrik M Bavoil, Anup Mahurkar, Garry S A Myers
Published 2013-01-01

Whole blood transcriptomic profiles can differentiate vulnerability to chronic low back pain.

by Susan G Dorsey, Cynthia L Renn, Mari Griffioen, Cameron B Lassiter, Shijun Zhu, Heather Huot-Creasy, Carrie McCracken, Anup Mahurkar, Amol C Shetty, Colleen K Jackson-Cook, Hyungsuk Kim, Wendy A Henderson, Leorey Saligan, Jessica Gill, Luana Colloca, Debra E Lyon, Angela R Starkweather
Published 2019-01-01

Metaviz: interactive statistical and visual analysis of metagenomic data

by Wagner, Justin, Chelaru, Florin, Kancherla, Jayaram, Paulson, Joseph N, Zhang, Alexander, Felix, Victor, Mahurkar, Anup, Elmqvist, Niklas, Corrada Bravo, Héctor
Published 2018

MetaRef: a pan-genomic database for comparative and community microbial genomics

by Huang, Katherine, Brady, Arthur, Mahurkar, Anup, White, Owen, Gevers, Dirk, Huttenhower, Curtis, Segata, Nicola
Published 2014