How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes

by Andrea Minio, Jerry Lin, Brandon S. Gaut, Dario Cantu
Published 2017-05-01

Diploid Genome Assembly of the Wine Grape Carménère

by Andrea Minio, Mélanie Massonnet, Rosa Figueroa-Balderas, Alvaro Castro, Dario Cantu
Published 2019-05-01

HiFi chromosome-scale diploid assemblies of the grape rootstocks 110R, Kober 5BB, and 101–14 Mgt

by Andrea Minio, Noé Cochetel, Mélanie Massonnet, Rosa Figueroa-Balderas, Dario Cantu
Published 2022-10-01

The genome assembly of the fungal pathogen Pyrenochaeta lycopersici from Single-Molecule Real-Time sequencing sheds new light on its biological complexity.

by Alessandra Dal Molin, Andrea Minio, Francesca Griggio, Massimo Delledonne, Alessandro Infantino, Maria Aragona
Published 2018-01-01

Diploid chromosome-scale assembly of the <i>Muscadinia rotundifolia</i> genome supports chromosome fusion and disease resistance gene expansion during <i>Vitis</i> and <i>Muscadini...

by Noé Cochetel, Andrea Minio, Mélanie Massonnet, Amanda M Vondras, Rosa Figueroa-Balderas, Dario Cantu
Published 2021-02-01

Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development

by Andrea Minio, Mélanie Massonnet, Rosa Figueroa-Balderas, Amanda M. Vondras, Barbara Blanco-Ulate, Dario Cantu
Published 2019-03-01

Comparative Pangenomic Insights into the Distinct Evolution of Virulence Factors Among Grapevine Trunk Pathogens

by Jadran F. Garcia, Abraham Morales-Cruz, Noé Cochetel, Andrea Minio, Rosa Figueroa-Balderas, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Published 2024-02-01

Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation

by Abraham Morales-Cruz, Jonas A. Aguirre-Liguori, Yongfeng Zhou, Andrea Minio, Summaira Riaz, Andrew M. Walker, Dario Cantu, Brandon S. Gaut
Published 2021-09-01

Whole-Genome Resequencing and Pan-Transcriptome Reconstruction Highlight the Impact of Genomic Structural Variation on Secondary Metabolite Gene Clusters in the Grapevine Esca Path...

by Mélanie Massonnet, Abraham Morales-Cruz, Andrea Minio, Rosa Figueroa-Balderas, Daniel P. Lawrence, Renaud Travadon, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Published 2018-08-01

Multigenic resistance to Xylella fastidiosa in wild grapes (Vitis sps.) and its implications within a changing climate

by Abraham Morales-Cruz, Jonas Aguirre-Liguori, Mélanie Massonnet, Andrea Minio, Mirella Zaccheo, Noe Cochetel, Andrew Walker, Summaira Riaz, Yongfeng Zhou, Dario Cantu, Brandon S. Gaut
Published 2023-05-01

Insights into the domestication of avocado and potential genetic contributors to heterodichogamy

by Edwin Solares, Abraham Morales-Cruz, Rosa Figueroa Balderas, Eric Focht, Vanessa E T M Ashworth, Skylar Wyant, Andrea Minio, Dario Cantu, Mary Lu Arpaia, Brandon S Gaut
Published 2022-12-01

Independent Whole-Genome Duplications Define the Architecture of the Genomes of the Devastating West African Cacao Black Pod Pathogen Phytophthora megakarya and Its Close Relative...

by Abraham Morales-Cruz, Shahin S. Ali, Andrea Minio, Rosa Figueroa-Balderas, Jadran F. García, Takao Kasuga, Alina S. Puig, Jean-Philippe Marelli, Bryan A. Bailey, Dario Cantu
Published 2020-07-01

A super-pangenome of the North American wild grape species

by Noé Cochetel, Andrea Minio, Andrea Guarracino, Jadran F. Garcia, Rosa Figueroa-Balderas, Mélanie Massonnet, Takao Kasuga, Jason P. Londo, Erik Garrison, Brandon S. Gaut, Dario Cantu
Published 2023-12-01

Phylogenomics of Plant-Associated Botryosphaeriaceae Species

by Jadran F. Garcia, Daniel P. Lawrence, Abraham Morales-Cruz, Abraham Morales-Cruz, Renaud Travadon, Andrea Minio, Rufina Hernandez-Martinez, Philippe E. Rolshausen, Kendra Baumgartner, Dario Cantu
Published 2021-03-01

Grapevine Grafting: Scion Transcript Profiling and Defense-Related Metabolites Induced by Rootstocks

by Walter Chitarra, Walter Chitarra, Irene Perrone, Carla G. Avanzato, Andrea Minio, Paolo Boccacci, Deborah Santini, Giovanna Gilardi, Ilenia Siciliano, Maria L. Gullino, Massimo Delledonne, Franco Mannini, Giorgio Gambino
Published 2017-04-01

‘Nebbiolo’ genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.)

by Simone Maestri, Giorgio Gambino, Giulia Lopatriello, Andrea Minio, Irene Perrone, Emanuela Cosentino, Barbara Giovannone, Luca Marcolungo, Massimiliano Alfano, Stephane Rombauts, Dario Cantu, Marzia Rossato, Massimo Delledonne, Luciano Calderón
Published 2022-02-01

The genetic basis of sex determination in grapes

by Mélanie Massonnet, Noé Cochetel, Andrea Minio, Amanda M. Vondras, Jerry Lin, Aline Muyle, Jadran F. Garcia, Yongfeng Zhou, Massimo Delledonne, Summaira Riaz, Rosa Figueroa-Balderas, Brandon S. Gaut, Dario Cantu
Published 2020-06-01

Unraveling the complexity of transcriptomic, metabolomic and quality environmental response of tomato fruit

by Daniela D’Esposito, Francesca Ferriello, Alessandra Dal Molin, Gianfranco Diretto, Adriana Sacco, Andrea Minio, Amalia Barone, Rossella Di Monaco, Silvana Cavella, Luca Tardella, Giovanni Giuliano, Massimo Delledonne, Luigi Frusciante, Maria Raffaella Ercolano
Published 2017-03-01

The genomic diversification of grapevine clones

by Amanda M. Vondras, Andrea Minio, Barbara Blanco-Ulate, Rosa Figueroa-Balderas, Michael A. Penn, Yongfeng Zhou, Danelle Seymour, Zirou Ye, Dingren Liang, Lucero K. Espinoza, Michael M. Anderson, M. Andrew Walker, Brandon Gaut, Dario Cantu
Published 2019-12-01

A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution

by Lorenzo Barchi, Marco Pietrella, Luca Venturini, Andrea Minio, Laura Toppino, Alberto Acquadro, Giuseppe Andolfo, Giuseppe Aprea, Carla Avanzato, Laura Bassolino, Cinzia Comino, Alessandra Dal Molin, Alberto Ferrarini, Louise Chappell Maor, Ezio Portis, Sebastian Reyes-Chin-Wo, Riccardo Rinaldi, Tea Sala, Davide Scaglione, Prashant Sonawane, Paola Tononi, Efrat Almekias-Siegl, Elisa Zago, Maria Raffaella Ercolano, Asaph Aharoni, Massimo Delledonne, Giovanni Giuliano, Sergio Lanteri, Giuseppe Leonardo Rotino
Published 2019-08-01