Ancestry and frequency of genetic variants in the general population are confounders in the characterization of germline variants linked to cancer

by Anna Bobyn, Mehdi Zarrei, Yuankun Zhu, Mary Hoffman, Darren Brenner, Adam C. Resnick, Stephen W. Scherer, Marco Gallo
Published 2020-05-01

IPMK Mediates Activation of ULK Signaling and Transcriptional Regulation of Autophagy Linked to Liver Inflammation and Regeneration

by Prasun Guha, Richa Tyagi, Sayan Chowdhury, Luke Reilly, Chenglai Fu, Risheng Xu, Adam C. Resnick, Solomon H. Snyder
Published 2019-03-01

A transcriptome-based classifier to determine molecular subtypes in medulloblastoma.

by Komal S Rathi, Sherjeel Arif, Mateusz Koptyra, Ammar S Naqvi, Deanne M Taylor, Phillip B Storm, Adam C Resnick, Jo Lynne Rokita, Pichai Raman
Published 2020-10-01

Radiomics for characterization of the glioma immune microenvironment

by Nastaran Khalili, Anahita Fathi Kazerooni, Ariana Familiar, Debanjan Haldar, Adam Kraya, Jessica Foster, Mateusz Koptyra, Phillip B. Storm, Adam C. Resnick, Ali Nabavizadeh
Published 2023-06-01

A Framework for the Interoperability of Cloud Platforms: Towards FAIR Data in SAFE Environments

by Robert L. Grossman, Rebecca R. Boyles, Brandi N. Davis-Dusenbery, Amanda Haddock, Allison P. Heath, Brian D. O’Connor, Adam C. Resnick, Deanne M. Taylor, Stan Ahalt
Published 2024-02-01

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

by Krutika S. Gaonkar, Federico Marini, Komal S. Rathi, Payal Jain, Yuankun Zhu, Nicholas A. Chimicles, Miguel A. Brown, Ammar S. Naqvi, Bo Zhang, Phillip B. Storm, John M. Maris, Pichai Raman, Adam C. Resnick, Konstantin Strauch, Jaclyn N. Taroni, Jo Lynne Rokita
Published 2020-12-01

Transcriptome signatures associated with meningioma progression

by Angela N. Viaene, Bo Zhang, Maria Martinez-Lage, Chaomei Xiang, Umberto Tosi, Jayesh P. Thawani, Busra Gungor, Yuankun Zhu, Laura Roccograndi, Logan Zhang, Robert L. Bailey, Phillip B. Storm, Donald M. O’Rourke, Adam C. Resnick, M. Sean Grady, Nadia Dahmane
Published 2019-04-01

MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data.

by Larry N Singh, Brian Ennis, Bryn Loneragan, Noah L Tsao, M Isabel G Lopez Sanchez, Jianping Li, Patrick Acheampong, Oanh Tran, Ian A Trounce, Yuankun Zhu, Prasanth Potluri, Regeneron Genetics Center, Beverly S Emanuel, Daniel J Rader, Zoltan Arany, Scott M Damrauer, Adam C Resnick, Stewart A Anderson, Douglas C Wallace
Published 2021-11-01

Development of GPC2-directed chimeric antigen receptors using mRNA for pediatric brain tumors

by David M Barrett, Daniel Martinez, Tiffany Smith, Jessica B Foster, Crystal Griffin, Jo Lynne Rokita, Allison Stern, Cameron Brimley, Komal Rathi, Maria V Lane, Samantha N Buongervino, Peter J Madsen, Alberto Delaidelli, Poul H Sorensen, Robert J Wechsler-Reya, Katalin Karikó, Phillip B Storm, Adam C Resnick, John M Maris, Kristopher R Bosse
Published 2022-09-01

Transcriptional immunogenomic analysis reveals distinct immunological clusters in paediatric nervous system tumours

by Arash Nabbi, Pengbo Beck, Alberto Delaidelli, Derek A. Oldridge, Sumedha Sudhaman, Kelsey Zhu, S. Y. Cindy Yang, David T. Mulder, Jeffrey P. Bruce, Joseph N. Paulson, Pichai Raman, Yuankun Zhu, Adam C. Resnick, Poul H. Sorensen, Martin Sill, Sebastian Brabetz, Sander Lambo, David Malkin, Pascal D. Johann, Marcel Kool, David T. W. Jones, Stefan M. Pfister, Natalie Jäger, Trevor J. Pugh
Published 2023-09-01

Automated temporalis muscle quantification and growth charts for children through adulthood

by Anna Zapaishchykova, Kevin X. Liu, Anurag Saraf, Zezhong Ye, Paul J. Catalano, Viviana Benitez, Yashwanth Ravipati, Arnav Jain, Julia Huang, Hasaan Hayat, Jirapat Likitlersuang, Sridhar Vajapeyam, Rishi B. Chopra, Ariana M. Familiar, Ali Nabavidazeh, Raymond H. Mak, Adam C. Resnick, Sabine Mueller, Tabitha M. Cooney, Daphne A. Haas-Kogan, Tina Y. Poussaint, Hugo J.W.L. Aerts, Benjamin H. Kann
Published 2023-11-01

The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science

by Jena V. Lilly, Jo Lynne Rokita, Jennifer L. Mason, Tatiana Patton, Stephanie Stefankiewiz, David Higgins, Gerri Trooskin, Carina A. Larouci, Kamnaa Arya, Elizabeth Appert, Allison P. Heath, Yuankun Zhu, Miguel A. Brown, Bo Zhang, Bailey K. Farrow, Shannon Robins, Allison M. Morgan, Thinh Q. Nguyen, Elizabeth Frenkel, Kaitlin Lehmann, Emily Drake, Catherine Sullivan, Alexa Plisiewicz, Noel Coleman, Luke Patterson, Mateusz Koptyra, Zeinab Helili, Nicholas Van Kuren, Nathan Young, Meen Chul Kim, Christopher Friedman, Alex Lubneuski, Christopher Blackden, Marti Williams, Valerie Baubet, Lamiya Tauhid, Jamie Galanaugh, Katie Boucher, Heba Ijaz, Kristina A. Cole, Namrata Choudhari, Mariarita Santi, Robert W. Moulder, Jonathan Waller, Whitney Rife, Sharon J. Diskin, Marion Mateos, Donald W. Parsons, Ian F. Pollack, Stewart Goldman, Sarah Leary, Chiara Caporalini, Anna Maria Buccoliero, Mirko Scagnet, David Haussler, Derek Hanson, Ron Firestein, Jason Cain, Joanna J. Phillips, Nalin Gupta, Sabine Mueller, Gerald Grant, Michelle Monje-Deisseroth, Sonia Partap, Jeffrey P. Greenfield, Rintaro Hashizume, Amy Smith, Shida Zhu, James M. Johnston, Jason R. Fangusaro, Matthew Miller, Matthew D. Wood, Sharon Gardner, Claire L. Carter, Laura M. Prolo, Jared Pisapia, Katherine Pehlivan, Andrea Franson, Toba Niazi, Josh Rubin, Mohamed Abdelbaki, David S. Ziegler, Holly B. Lindsay, Ana Guerreiro Stucklin, Nicolas Gerber, Olena M. Vaske, Carolyn Quinsey, Brian R. Rood, Javad Nazarian, Eric Raabe, Eric M. Jackson, Stacie Stapleton, Robert M. Lober, David E. Kram, Carl Koschmann, Phillip B. Storm, Rishi R. Lulla, Michael Prados, Adam C. Resnick, Angela J. Waanders
Published 2023-01-01

Targeting PI3K in personalized treatment of BRAF-mutated pediatric low-grade gliomas

by Olow, Aleksandra K, Mueller, Sabine, Yang, Xiaodong, Hashizume, Rintaro, Weiss, William, Resnick, Adam C, Sievert, Angela J, Berger, Mitchel S, Gupta, Nalin, James, David C, Haas-Kogan, Daphne A
Published 2015