From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer

by Aaron Weimann, Kyra Mooren, Jeremy Frank, Phillip B. Pope, Andreas Bremges, Alice C. McHardy
Published 2016-12-01

Mutational spectra are associated with bacterial niche

by Christopher Ruis, Aaron Weimann, Gerry Tonkin-Hill, Arun Prasad Pandurangan, Marta Matuszewska, Gemma G. R. Murray, Roger C. Lévesque, Tom L. Blundell, R. Andres Floto, Julian Parkhill
Published 2023-11-01

Seqenv: linking sequences to environments through text mining

by Lucas Sinclair, Umer Z. Ijaz, Lars Juhl Jensen, Marco J.L. Coolen, Cecile Gubry-Rangin, Alica Chroňáková, Anastasis Oulas, Christina Pavloudi, Julia Schnetzer, Aaron Weimann, Ali Ijaz, Alexander Eiler, Christopher Quince, Evangelos Pafilis
Published 2016-12-01

Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics

by Ariane Khaledi, Aaron Weimann, Monika Schniederjans, Ehsaneddin Asgari, Tzu‐Hao Kuo, Antonio Oliver, Gabriel Cabot, Axel Kola, Petra Gastmeier, Michael Hogardt, Daniel Jonas, Mohammad RK Mofrad, Andreas Bremges, Alice C McHardy, Susanne Häussler
Published 2020-03-01

Producing polished prokaryotic pangenomes with the Panaroo pipeline

by Gerry Tonkin-Hill, Neil MacAlasdair, Christopher Ruis, Aaron Weimann, Gal Horesh, John A. Lees, Rebecca A. Gladstone, Stephanie Lo, Christopher Beaudoin, R. Andres Floto, Simon D.W. Frost, Jukka Corander, Stephen D. Bentley, Julian Parkhill
Published 2020-07-01

Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

by Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. McHardy, Paul Schulze-Lefert, Richard J. O’Connell
Published 2016-05-01

Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi

by Stéphane Hacquard, Barbara Kracher, Kei Hiruma, Philipp C. Münch, Ruben Garrido-Oter, Michael R. Thon, Aaron Weimann, Ulrike Damm, Jean-Félix Dallery, Matthieu Hainaut, Bernard Henrissat, Olivier Lespinet, Soledad Sacristán, Emiel Ver Loren van Themaat, Eric Kemen, Alice C. McHardy, Paul Schulze-Lefert, Richard J. O’Connell
Published 2016-09-01

Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes

by Irena Maus, Andreas Bremges, Yvonne Stolze, Sarah Hahnke, Katharina G. Cibis, Daniela E. Koeck, Yong S. Kim, Jana Kreubel, Julia Hassa, Daniel Wibberg, Aaron Weimann, Sandra Off, Robbin Stantscheff, Vladimir V. Zverlov, Wolfgang H. Schwarz, Helmut König, Wolfgang Liebl, Paul Scherer, Alice C. McHardy, Alexander Sczyrba, Michael Klocke, Alfred Pühler, Andreas Schlüter
Published 2017-11-01