Predicting the spatial distribution of rock properties is the key to a successful reservoir evaluation for hydrocarbon potential. However, a reservoir with a complex environmental setting (e.g. shallow marine) becomes more challenging to be characterized due to variations of clay, grain size, compaction, cementation, and other diagenetic effects. The assumption of increasing permeability value with an increase of porosity may not be always the case in such an environment. This study aims to investigate factors controlling the porosity and permeability relationships at Lower J Reservoir of J20, J25, and J30, Malay Basin. Porosity permeability values from routine core analysis were plotted accordingly in four different sets which are: lithofacies based, stratigraphic members based, quartz volume-based, and grain-sized based, to investigate the trend in relating porosity and permeability distribution. Based on petrographical studies, the effect of grain sorting, mineral type, and diagenetic event on reservoir properties was investigated and characterized. The clay type and its morphology were analyzed using X-ray Diffractometer (XRD) and Spectral electron microscopy. Results from porosity and permeability cross-plot show that lithofacies type play a significant control on reservoir quality. It shows that most of the S1 and S2 located at top of the plot while lower grade lithofacies of S41, S42, and S43 distributed at the middle and lower zone of the plot. However, there are certain points of best and lower quality lithofacies not located in the theoretical area. The detailed analysis of petrographic studies shows that the diagenetic effect of cementation and clay coating destroys porosity while mineral dissolution improved porosity. A porosity permeability plot based on stratigraphic members showed that J20 points located at the top indicating less compaction effect to reservoir properties. J25 and J30 points were observed randomly distributed located at the middle and bottom zone suggesting that compaction has less effect on both J25 and J30 sands. Lithofacies description that was done by visual analysis through cores only may not correlate-able with rock properties. This is possibly due to the diagenetic effect which controls porosity and permeability cannot visually be seen at the core. By incorporating petrographical analysis results, the relationship between porosity, permeability, and lithofacies can be further improved for better reservoir characterization. The study might change the conventional concept that lower quality lithofacies does not have economic hydrocarbon potential and unlock more hydrocarbon-bearing reserves especially in these types of environmental settings. Copyright © 2021, International Petroleum Technology Conference.