Binding of tetrabutylammonium bromide based deep eutectic solvent to DNA by spectroscopic analysis

Yusof, R. and Jumbri, K. and Ahmad, H. and Abdulmalek, E. and Abdul Rahman, M.B. (2021) Binding of tetrabutylammonium bromide based deep eutectic solvent to DNA by spectroscopic analysis. Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, 253. ISSN 13861425

Full text not available from this repository.
Official URL: https://www.scopus.com/inward/record.uri?eid=2-s2....

Abstract

The binding characteristics of DNA in deep eutectic solvents (DESs), particularly the binding energy and interaction mechanism, are not widely known. In this study, the binding of tetrabutylammonium bromide (TBABr) based DES of different hydrogen bond donors (HBD), including ethylene glycol (EG), glycerol (Gly), 1,3-propanediol (1,3-PD) and 1,5-pentanediol (1,5-PD), to calf thymus DNA was investigated using fluorescence spectroscopy. It was found that the shorter the alkyl chain length (2 carbons) and higher EG ratios of TBABr:EG (1:5) increased the binding constant (Kb) between DES and DNA up to 5.75 � 105 kJ mol�1 and decreased the binding of Gibbs energy (�Go) to 32.86 kJ mol�1. Through displacement studies, all synthesised DESs have been shown to displace DAPI (4�,6-diamidino-2-phenylindole) and were able to bind on the minor groove of Adenine-Thymine (AT)-rich DNA. A higher number of hydroxyl (OH) groups caused the TBABr:Gly to form more hydrogen bonds with DNA bases and had the highest ability to quench DAPI from DNA, with Stern-Volmer constants (Ksv) of 115.16 M�1. This study demonstrated that the synthesised DESs were strongly bound to DNA through a combination of electrostatic, hydrophobic, and groove binding. Hence, DES has the potential to solvate and stabilise nucleic acid structures. © 2021 Elsevier B.V.

Item Type: Article
Additional Information: cited By 7
Uncontrolled Keywords: Bromine compounds; DNA; Ethylene; Ethylene glycol; Eutectics; Fluorescence spectroscopy; Hydrogen bonds; Spectroscopic analysis, 1 ,3 propanediol (1 ,3 pd); Binding characteristics; Deep eutectic solvents; Hydrogen bond donors; Interaction mechanisms; Nucleic acid structure; Stern-Volmer constants; Tetrabutylammonium bromide, Binding energy, DNA; quaternary ammonium derivative; solvent; tetrabutylammonium, hydrogen bond, DNA; Hydrogen Bonding; Quaternary Ammonium Compounds; Solvents
Depositing User: Mr Ahmad Suhairi UTP
Date Deposited: 10 Nov 2023 03:29
Last Modified: 10 Nov 2023 03:29
URI: https://khub.utp.edu.my/scholars/id/eprint/14935

Actions (login required)

View Item
View Item