A Computational Framework for Proteome-Wide Pursuit and Prediction of Metalloproteins using ICP-MS and MS/MS Data

by Trauger Sunia A, Apon Junefredo V, Kalisiak Ewa, Thorgersen Michael P, Jenney Francis E, Scott Joseph W, Menon Angeli, Cvetkovic Aleksandar, Poole Farris L, Praissman Jeremy L, Lancaster W Andrew, Siuzdak Gary, Tainer John A, W Adams Michael W
Published 2011-02-01

Structural analysis of flexible proteins in solution by Small Angle X-ray Scattering combined with crystallography

by Tsutakawa, Susan E., Hura, Greg L., Frankel, Ken A., Cooper, Priscilla K., Tainer, John A.
Published 2006

WRN Exonuclease Structure, Molecular Mechanism, and DNA End Processing Role

by Perry, J. Jefferson P., Yannone, Steven M., Holden, Lauren G., Hitomi, Chiharu, Asaithamby, Aroumougame, Han, Seungil, Cooper, Priscilla K., Chen, David J., Tainer, John A.
Published 2006

Structural basis for recognition of 5'-phosphotyrosine adducts by TDP2

by Shi, Ke, Kurahash, Kayo, Gao, Rui, Tsutakawa, Susan E., Tainer, John A., Pommier, Yves, Aihara, Hideki
Published 2012

Transcription preinitiation complex structure and dynamics provide insight into genetic diseases.

by Yan, Chunli, Dodd, Thomas, He, Yuan, Tainer, John A, Tsutakawa, Susan E, Ivanov, Ivaylo
Published 2019

Single-molecule FRET unveils induced-fit mechanism for substrate selectivity in flap endonuclease 1.

by Rashid, Fahad, Harris, Paul D, Zaher, Manal S, Sobhy, Mohamed A, Joudeh, Luay I, Yan, Chunli, Piwonski, Hubert, Tsutakawa, Susan E, Ivanov, Ivaylo, Tainer, John A, Habuchi, Satoshi, Hamdan, Samir M
Published 2017

Hybrid Methods Reveal Multiple Flexibly Linked DNA Polymerases within the Bacteriophage T7 Replisome.

by Wallen, Jamie R, Zhang, Hao, Weis, Caroline, Cui, Weidong, Foster, Brittni M, Ho, Chris MW, Hammel, Michal, Tainer, John A, Gross, Michael L, Ellenberger, Tom
Published 2017

SIBYLS - A SAXS and protein crystallography beamline at the ALS

by Trame, Christine, MacDowell, Alastair A., Celestre, Richard S., Padmore, Howard A., Cambie, Daniella, Domning, Edward E., Duarte, Robert M., Kelez, Nicholas, Plate, David W., Holton, James M., Frankel, Kenneth, Tsutakawa, Susan, Tsuruta, Hiro, Tainer, John A., Cooper, Priscilla K.
Published 2003

Target highlights in CASP14: Analysis of models by structure providers.

by Alexander, Leila T, Lepore, Rosalba, Kryshtafovych, Andriy, Adamopoulos, Athanassios, Alahuhta, Markus, Arvin, Ann M, Bomble, Yannick J, Böttcher, Bettina, Breyton, Cécile, Chiarini, Valerio, Chinnam, Naga Babu, Chiu, Wah, Fidelis, Krzysztof, Grinter, Rhys, Gupta, Gagan D, Hartmann, Marcus D, Hayes, Christopher S, Heidebrecht, Tatjana, Ilari, Andrea, Joachimiak, Andrzej, Kim, Youngchang, Linares, Romain, Lovering, Andrew L, Lunin, Vladimir V, Lupas, Andrei N, Makbul, Cihan, Michalska, Karolina, Moult, John, Mukherjee, Prasun K, Nutt, William Sam, Oliver, Stefan L, Perrakis, Anastassis, Stols, Lucy, Tainer, John A, Topf, Maya, Tsutakawa, Susan E, Valdivia-Delgado, Mauricio, Schwede, Torsten
Published 2021

Dissection of DNA double-strand-break repair using novel single-molecule forceps.

by Wang, Jing L, Duboc, Camille, Wu, Qian, Ochi, Takashi, Liang, Shikang, Tsutakawa, Susan E, Lees-Miller, Susan P, Nadal, Marc, Tainer, John A, Blundell, Tom L, Strick, Terence R
Published 2018

Defining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor.

by Brosey, Chris A, Ho, Chris, Long, Winnie Z, Singh, Sukrit, Burnett, Kathryn, Hura, Greg L, Nix, Jay C, Bowman, Gregory R, Ellenberger, Tom, Tainer, John A
Published 2016

Dissection of DNA double-strand-break repair using novel single-molecule forceps.

by Wang, Jing L, Duboc, Camille, Wu, Qian, Ochi, Takashi, Liang, Shikang, Tsutakawa, Susan E, Lees-Miller, Susan P, Nadal, Marc, Tainer, John A, Blundell, Tom L, Strick, Terence R
Published 2021

Mechanism of efficient double-strand break repair by a long non-coding RNA.

by Thapar, Roopa, Wang, Jing L, Hammel, Michal, Ye, Ruiqiong, Liang, Ke, Sun, Chengcao, Hnizda, Ales, Liang, Shikang, Maw, Su S, Lee, Linda, Villarreal, Heather, Forrester, Isaac, Fang, Shujuan, Tsai, Miaw-Sheue, Blundell, Tom L, Davis, Anthony J, Lin, Chunru, Lees-Miller, Susan P, Strick, Terence R, Tainer, John A
Published 2020

The nucleotide-dependent interaction of FlaH and FlaI is essential for assembly and function of the archaellum motor.

by Chaudhury, Paushali, Neiner, Tomasz, D'Imprima, Edoardo, Banerjee, Ankan, Reindl, Sophia, Ghosh, Abhrajyoti, Arvai, Andrew S, Mills, Deryck J, van der Does, Chris, Tainer, John A, Vonck, Janet, Albers, Sonja-Verena
Published 2016

Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN.

by Stingele, Julian, Bellelli, Roberto, Alte, Ferdinand, Hewitt, Graeme, Sarek, Grzegorz, Maslen, Sarah L, Tsutakawa, Susan E, Borg, Annabel, Kjær, Svend, Tainer, John A, Skehel, J Mark, Groll, Michael, Boulton, Simon J
Published 2016

Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues.

by Youngblut, Matthew D, Tsai, Chi-Lin, Clark, Iain C, Carlson, Hans K, Maglaqui, Adrian P, Gau-Pan, Phonchien S, Redford, Steven A, Wong, Alan, Tainer, John A, Coates, John D
Published 2016

Microhomology-mediated end joining is activated in irradiated human cells due to phosphorylation-dependent formation of the XRCC1 repair complex.

by Dutta, Arijit, Eckelmann, Bradley, Adhikari, Sanjay, Ahmed, Kazi Mokim, Sengupta, Shiladitya, Pandey, Arvind, Hegde, Pavana M, Tsai, Miaw-Sheue, Tainer, John A, Weinfeld, Michael, Hegde, Muralidhar L, Mitra, Sankar
Published 2017

Uncovering DNA-PKcs ancient phylogeny, unique sequence motifs and insights for human disease.

by Lees-Miller, James P, Cobban, Alexander, Katsonis, Panagiotis, Bacolla, Albino, Tsutakawa, Susan E, Hammel, Michal, Meek, Katheryn, Anderson, Dave W, Lichtarge, Olivier, Tainer, John A, Lees-Miller, Susan P
Published 2021

Small angle X-ray scattering-assisted protein structure prediction in CASP13 and emergence of solution structure differences.

by Hura, Greg L, Hodge, Curtis D, Rosenberg, Daniel, Guzenko, Dmytro, Duarte, Jose M, Monastyrskyy, Bohdan, Grudinin, Sergei, Kryshtafovych, Andriy, Tainer, John A, Fidelis, Krzysztof, Tsutakawa, Susan E
Published 2019

Envisioning how the prototypic molecular machine TFIIH functions in transcription initiation and DNA repair.

by Tsutakawa, Susan E, Tsai, Chi-Lin, Yan, Chunli, Bralić, Amer, Chazin, Walter J, Hamdan, Samir M, Schärer, Orlando D, Ivanov, Ivaylo, Tainer, John A
Published 2020